Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0115 and Rru_A0116 overlap by 4 nucleotides Rru_A0116 and Rru_A0117 overlap by 4 nucleotides Rru_A0117 and Rru_A0118 overlap by 10 nucleotides
Rru_A0115: Rru_A0115 - hypothetical protein (NCBI), at 134,884 to 136,362
_A0115
Rru_A0116: Rru_A0116 - hypothetical protein (NCBI), at 136,359 to 137,330
_A0116
Rru_A0117: Rru_A0117 - ABC transporter component (NCBI), at 137,327 to 138,064
_A0117
Rru_A0118: Rru_A0118 - type II secretion system protein E (NCBI), at 138,055 to 139,101
_A0118
Position (kb) 136
137
138 Strain fitness (log2 ratio) -1
0
1
2 at 135.556 kb on + strand, within Rru_A0115 at 135.556 kb on + strand, within Rru_A0115 at 135.556 kb on + strand, within Rru_A0115 at 135.557 kb on - strand, within Rru_A0115 at 135.557 kb on - strand, within Rru_A0115 at 135.785 kb on + strand, within Rru_A0115 at 135.785 kb on + strand, within Rru_A0115 at 135.786 kb on - strand, within Rru_A0115 at 135.786 kb on - strand, within Rru_A0115 at 135.786 kb on - strand, within Rru_A0115 at 136.703 kb on + strand, within Rru_A0116 at 136.703 kb on + strand, within Rru_A0116 at 136.704 kb on - strand, within Rru_A0116 at 137.167 kb on - strand, within Rru_A0116 at 137.167 kb on - strand, within Rru_A0116 at 137.292 kb on + strand at 137.293 kb on - strand at 137.327 kb on - strand at 137.327 kb on - strand at 137.327 kb on - strand at 137.380 kb on - strand at 137.579 kb on + strand, within Rru_A0117 at 137.579 kb on + strand, within Rru_A0117 at 137.579 kb on + strand, within Rru_A0117
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 135,556 + Rru_A0115 0.45 -1.2 135,556 + Rru_A0115 0.45 +0.8 135,556 + Rru_A0115 0.45 -0.0 135,557 - Rru_A0115 0.46 -0.4 135,557 - Rru_A0115 0.46 +1.7 135,785 + Rru_A0115 0.61 -0.0 135,785 + Rru_A0115 0.61 +0.9 135,786 - Rru_A0115 0.61 +1.3 135,786 - Rru_A0115 0.61 -0.0 135,786 - Rru_A0115 0.61 -0.2 136,703 + Rru_A0116 0.35 +0.7 136,703 + Rru_A0116 0.35 +0.7 136,704 - Rru_A0116 0.35 +1.4 137,167 - Rru_A0116 0.83 +0.4 137,167 - Rru_A0116 0.83 +0.8 137,292 + -0.0 137,293 - +2.5 137,327 - -0.0 137,327 - +0.8 137,327 - -0.0 137,380 - +0.6 137,579 + Rru_A0117 0.34 +0.4 137,579 + Rru_A0117 0.34 +1.6 137,579 + Rru_A0117 0.34 +1.5
Or see this region's nucleotide sequence