Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0105 and Rru_A0106 are separated by 94 nucleotides Rru_A0106 and Rru_A0107 overlap by 4 nucleotides Rru_A0107 and Rru_A0108 are separated by 14 nucleotides Rru_A0108 and Rru_A0109 are separated by 118 nucleotides
Rru_A0105: Rru_A0105 - Penicillin-binding protein 1C (NCBI), at 123,031 to 125,151
_A0105
Rru_A0106: Rru_A0106 - TPR repeat, Tetratricopeptide TPR_4 (NCBI), at 125,246 to 126,043
_A0106
Rru_A0107: Rru_A0107 - MSHA biogenesis protein MshM (NCBI), at 126,040 to 126,951
_A0107
Rru_A0108: Rru_A0108 - Peptidase A24A, prepilin type IV (NCBI), at 126,966 to 127,592
_A0108
Rru_A0109: Rru_A0109 - type II and III secretion system protein (NCBI), at 127,711 to 129,354
_A0109
Position (kb) 126
127 Strain fitness (log2 ratio) -1
0
1
2
3 at 125.161 kb on - strand at 125.177 kb on - strand at 125.625 kb on - strand, within Rru_A0106 at 125.788 kb on - strand, within Rru_A0106 at 125.788 kb on - strand, within Rru_A0106 at 125.788 kb on - strand, within Rru_A0106 at 126.219 kb on + strand, within Rru_A0107 at 126.220 kb on - strand, within Rru_A0107 at 126.226 kb on + strand, within Rru_A0107 at 126.227 kb on - strand, within Rru_A0107 at 126.227 kb on - strand, within Rru_A0107 at 126.227 kb on - strand, within Rru_A0107 at 126.227 kb on - strand, within Rru_A0107 at 126.227 kb on - strand, within Rru_A0107 at 126.640 kb on + strand, within Rru_A0107 at 126.640 kb on + strand, within Rru_A0107 at 126.641 kb on - strand, within Rru_A0107 at 126.641 kb on - strand, within Rru_A0107 at 126.641 kb on - strand, within Rru_A0107 at 126.778 kb on + strand, within Rru_A0107 at 127.149 kb on + strand, within Rru_A0108 at 127.149 kb on + strand, within Rru_A0108 at 127.149 kb on + strand, within Rru_A0108 at 127.356 kb on + strand, within Rru_A0108 at 127.656 kb on - strand at 127.661 kb on + strand at 127.674 kb on - strand at 127.674 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 125,161 - +1.7 125,177 - +1.7 125,625 - Rru_A0106 0.47 +0.6 125,788 - Rru_A0106 0.68 +1.7 125,788 - Rru_A0106 0.68 -0.0 125,788 - Rru_A0106 0.68 +2.0 126,219 + Rru_A0107 0.20 +2.2 126,220 - Rru_A0107 0.20 +1.7 126,226 + Rru_A0107 0.20 -0.0 126,227 - Rru_A0107 0.21 +1.7 126,227 - Rru_A0107 0.21 +3.5 126,227 - Rru_A0107 0.21 +3.0 126,227 - Rru_A0107 0.21 -0.0 126,227 - Rru_A0107 0.21 +2.2 126,640 + Rru_A0107 0.66 +2.2 126,640 + Rru_A0107 0.66 +1.9 126,641 - Rru_A0107 0.66 +2.0 126,641 - Rru_A0107 0.66 +1.8 126,641 - Rru_A0107 0.66 +2.6 126,778 + Rru_A0107 0.81 +1.4 127,149 + Rru_A0108 0.29 +1.1 127,149 + Rru_A0108 0.29 +1.2 127,149 + Rru_A0108 0.29 +1.8 127,356 + Rru_A0108 0.62 -0.0 127,656 - +1.7 127,661 + +1.0 127,674 - -0.0 127,674 - +2.3
Or see this region's nucleotide sequence