Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0096 and Rru_A0097 are separated by 156 nucleotides Rru_A0097 and Rru_A0098 are separated by 56 nucleotides
Rru_A0096: Rru_A0096 - Secretion protein HlyD (NCBI), at 110,136 to 111,101
_A0096
Rru_A0097: Rru_A0097 - Class I peptide chain release factor (NCBI), at 111,258 to 111,680
_A0097
Rru_A0098: Rru_A0098 - Cystathionine gamma-synthase (NCBI), at 111,737 to 112,948
_A0098
Position (kb) 111
112 Strain fitness (log2 ratio) -1
0
1
2 at 110.425 kb on - strand, within Rru_A0096 at 110.580 kb on + strand, within Rru_A0096 at 110.580 kb on + strand, within Rru_A0096 at 110.580 kb on + strand, within Rru_A0096 at 110.581 kb on - strand, within Rru_A0096 at 111.186 kb on + strand at 111.187 kb on - strand at 111.187 kb on - strand at 111.187 kb on - strand at 111.260 kb on - strand at 111.534 kb on + strand, within Rru_A0097 at 111.582 kb on + strand, within Rru_A0097 at 111.583 kb on - strand, within Rru_A0097 at 111.691 kb on + strand at 111.692 kb on - strand at 111.692 kb on - strand at 111.692 kb on - strand at 111.738 kb on + strand at 111.738 kb on + strand at 111.835 kb on - strand at 111.897 kb on + strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.936 kb on + strand, within Rru_A0098 at 111.936 kb on + strand, within Rru_A0098 at 111.937 kb on - strand, within Rru_A0098 at 112.110 kb on + strand, within Rru_A0098 at 112.110 kb on + strand, within Rru_A0098 at 112.110 kb on + strand, within Rru_A0098 at 112.111 kb on - strand, within Rru_A0098 at 112.309 kb on - strand, within Rru_A0098 at 112.309 kb on - strand, within Rru_A0098 at 112.573 kb on + strand, within Rru_A0098 at 112.603 kb on - strand, within Rru_A0098
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 110,425 - Rru_A0096 0.30 -0.0 110,580 + Rru_A0096 0.46 +1.4 110,580 + Rru_A0096 0.46 +1.2 110,580 + Rru_A0096 0.46 -1.0 110,581 - Rru_A0096 0.46 -0.0 111,186 + +1.8 111,187 - -1.6 111,187 - -0.0 111,187 - +0.4 111,260 - -0.0 111,534 + Rru_A0097 0.65 +0.3 111,582 + Rru_A0097 0.77 -0.0 111,583 - Rru_A0097 0.77 +0.4 111,691 + +1.0 111,692 - -0.0 111,692 - -0.0 111,692 - +0.3 111,738 + -0.0 111,738 + -0.0 111,835 - -0.0 111,897 + Rru_A0098 0.13 +0.6 111,898 - Rru_A0098 0.13 -0.0 111,898 - Rru_A0098 0.13 +2.2 111,898 - Rru_A0098 0.13 -0.0 111,898 - Rru_A0098 0.13 -0.0 111,898 - Rru_A0098 0.13 +1.3 111,898 - Rru_A0098 0.13 +0.9 111,936 + Rru_A0098 0.16 +0.6 111,936 + Rru_A0098 0.16 -0.4 111,937 - Rru_A0098 0.17 -0.0 112,110 + Rru_A0098 0.31 +1.0 112,110 + Rru_A0098 0.31 +1.2 112,110 + Rru_A0098 0.31 -0.0 112,111 - Rru_A0098 0.31 -0.0 112,309 - Rru_A0098 0.47 +2.1 112,309 - Rru_A0098 0.47 -0.0 112,573 + Rru_A0098 0.69 -1.0 112,603 - Rru_A0098 0.71 +1.1
Or see this region's nucleotide sequence