Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0088 and Rru_A0089 are separated by 120 nucleotides Rru_A0089 and Rru_A0090 are separated by 275 nucleotides Rru_A0090 and Rru_A0091 are separated by 3 nucleotides
Rru_A0088: Rru_A0088 - Zinc-containing alcohol dehydrogenase superfamily (NCBI), at 101,509 to 102,531
_A0088
Rru_A0089: Rru_A0089 - ATP-dependent DNA helicase RecQ (NCBI), at 102,652 to 104,541
_A0089
Rru_A0090: Rru_A0090 - Prevent-host-death protein (NCBI), at 104,817 to 105,059
_A0090
Rru_A0091: Rru_A0091 - PilT protein-like (NCBI), at 105,063 to 105,497
_A0091
Position (kb) 102
103
104
105 Strain fitness (log2 ratio) -1
0
1
2
3 at 101.770 kb on + strand, within Rru_A0088 at 101.770 kb on + strand, within Rru_A0088 at 101.771 kb on - strand, within Rru_A0088 at 101.771 kb on - strand, within Rru_A0088 at 102.291 kb on + strand, within Rru_A0088 at 102.291 kb on + strand, within Rru_A0088 at 102.292 kb on - strand, within Rru_A0088 at 102.292 kb on - strand, within Rru_A0088 at 102.328 kb on + strand, within Rru_A0088 at 102.328 kb on + strand, within Rru_A0088 at 102.328 kb on + strand, within Rru_A0088 at 102.329 kb on - strand, within Rru_A0088 at 102.329 kb on - strand, within Rru_A0088 at 102.329 kb on - strand, within Rru_A0088 at 102.329 kb on - strand, within Rru_A0088 at 102.529 kb on + strand at 102.529 kb on + strand at 102.599 kb on + strand at 102.600 kb on - strand at 102.763 kb on - strand at 102.763 kb on - strand at 102.763 kb on - strand at 103.063 kb on + strand, within Rru_A0089 at 103.063 kb on + strand, within Rru_A0089 at 103.064 kb on - strand, within Rru_A0089 at 103.064 kb on - strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.190 kb on - strand, within Rru_A0089 at 103.279 kb on - strand, within Rru_A0089 at 103.407 kb on + strand, within Rru_A0089 at 103.429 kb on + strand, within Rru_A0089 at 103.430 kb on - strand, within Rru_A0089 at 103.663 kb on + strand, within Rru_A0089 at 103.664 kb on - strand, within Rru_A0089 at 103.664 kb on - strand, within Rru_A0089 at 103.664 kb on - strand, within Rru_A0089 at 103.664 kb on - strand, within Rru_A0089 at 103.664 kb on - strand, within Rru_A0089 at 103.664 kb on - strand, within Rru_A0089 at 103.664 kb on - strand, within Rru_A0089 at 103.664 kb on - strand, within Rru_A0089 at 103.666 kb on + strand, within Rru_A0089 at 103.667 kb on - strand, within Rru_A0089 at 103.723 kb on + strand, within Rru_A0089 at 103.723 kb on + strand, within Rru_A0089 at 103.724 kb on - strand, within Rru_A0089 at 103.724 kb on - strand, within Rru_A0089 at 103.724 kb on - strand, within Rru_A0089 at 103.724 kb on - strand, within Rru_A0089 at 103.724 kb on - strand, within Rru_A0089 at 103.910 kb on + strand, within Rru_A0089 at 103.910 kb on + strand, within Rru_A0089 at 103.910 kb on + strand, within Rru_A0089 at 103.910 kb on + strand, within Rru_A0089 at 103.910 kb on + strand, within Rru_A0089 at 103.910 kb on + strand, within Rru_A0089 at 103.910 kb on + strand, within Rru_A0089 at 103.911 kb on - strand, within Rru_A0089 at 103.911 kb on - strand, within Rru_A0089 at 103.911 kb on - strand, within Rru_A0089 at 103.911 kb on - strand, within Rru_A0089 at 103.911 kb on - strand, within Rru_A0089 at 103.911 kb on - strand, within Rru_A0089 at 104.016 kb on + strand, within Rru_A0089 at 104.017 kb on - strand, within Rru_A0089 at 104.064 kb on + strand, within Rru_A0089 at 104.395 kb on + strand at 104.395 kb on + strand at 104.395 kb on + strand at 104.706 kb on + strand at 104.706 kb on + strand at 104.707 kb on - strand at 104.707 kb on - strand at 104.751 kb on + strand at 104.751 kb on + strand at 104.752 kb on - strand at 104.752 kb on - strand at 104.752 kb on - strand at 104.752 kb on - strand at 105.066 kb on + strand at 105.066 kb on + strand at 105.066 kb on + strand at 105.067 kb on - strand at 105.067 kb on - strand at 105.067 kb on - strand at 105.067 kb on - strand at 105.067 kb on - strand at 105.067 kb on - strand at 105.279 kb on + strand, within Rru_A0091 at 105.280 kb on - strand, within Rru_A0091 at 105.280 kb on - strand, within Rru_A0091
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 101,770 + Rru_A0088 0.26 +1.7 101,770 + Rru_A0088 0.26 -0.0 101,771 - Rru_A0088 0.26 -0.0 101,771 - Rru_A0088 0.26 +1.1 102,291 + Rru_A0088 0.76 +0.6 102,291 + Rru_A0088 0.76 -0.0 102,292 - Rru_A0088 0.77 -0.0 102,292 - Rru_A0088 0.77 +0.6 102,328 + Rru_A0088 0.80 +1.0 102,328 + Rru_A0088 0.80 +0.5 102,328 + Rru_A0088 0.80 +1.2 102,329 - Rru_A0088 0.80 -0.0 102,329 - Rru_A0088 0.80 -0.0 102,329 - Rru_A0088 0.80 -0.0 102,329 - Rru_A0088 0.80 -1.0 102,529 + -0.0 102,529 + -0.0 102,599 + -0.0 102,600 - +0.5 102,763 - +2.0 102,763 - -0.0 102,763 - -1.0 103,063 + Rru_A0089 0.22 -0.0 103,063 + Rru_A0089 0.22 +1.6 103,064 - Rru_A0089 0.22 -0.0 103,064 - Rru_A0089 0.22 -1.0 103,189 + Rru_A0089 0.28 +1.2 103,189 + Rru_A0089 0.28 +0.6 103,189 + Rru_A0089 0.28 -0.7 103,189 + Rru_A0089 0.28 -0.0 103,189 + Rru_A0089 0.28 +1.9 103,190 - Rru_A0089 0.28 -0.0 103,279 - Rru_A0089 0.33 -1.0 103,407 + Rru_A0089 0.40 +1.0 103,429 + Rru_A0089 0.41 +1.0 103,430 - Rru_A0089 0.41 -0.0 103,663 + Rru_A0089 0.53 -1.6 103,664 - Rru_A0089 0.54 +2.0 103,664 - Rru_A0089 0.54 -0.0 103,664 - Rru_A0089 0.54 -0.0 103,664 - Rru_A0089 0.54 -0.0 103,664 - Rru_A0089 0.54 +1.2 103,664 - Rru_A0089 0.54 +0.8 103,664 - Rru_A0089 0.54 +1.2 103,664 - Rru_A0089 0.54 +0.3 103,666 + Rru_A0089 0.54 -0.0 103,667 - Rru_A0089 0.54 +2.4 103,723 + Rru_A0089 0.57 +1.3 103,723 + Rru_A0089 0.57 -0.7 103,724 - Rru_A0089 0.57 -0.2 103,724 - Rru_A0089 0.57 -0.0 103,724 - Rru_A0089 0.57 -0.0 103,724 - Rru_A0089 0.57 -0.0 103,724 - Rru_A0089 0.57 +1.1 103,910 + Rru_A0089 0.67 -0.0 103,910 + Rru_A0089 0.67 -0.0 103,910 + Rru_A0089 0.67 -0.0 103,910 + Rru_A0089 0.67 -0.0 103,910 + Rru_A0089 0.67 -0.0 103,910 + Rru_A0089 0.67 +1.9 103,910 + Rru_A0089 0.67 +1.7 103,911 - Rru_A0089 0.67 +2.2 103,911 - Rru_A0089 0.67 -0.0 103,911 - Rru_A0089 0.67 +0.6 103,911 - Rru_A0089 0.67 -0.0 103,911 - Rru_A0089 0.67 -0.0 103,911 - Rru_A0089 0.67 +0.9 104,016 + Rru_A0089 0.72 +0.9 104,017 - Rru_A0089 0.72 +1.3 104,064 + Rru_A0089 0.75 -0.0 104,395 + -0.0 104,395 + -0.0 104,395 + +1.9 104,706 + +1.0 104,706 + -0.0 104,707 - -0.0 104,707 - +0.8 104,751 + +1.3 104,751 + +0.6 104,752 - +1.1 104,752 - +0.7 104,752 - +1.3 104,752 - +1.0 105,066 + +1.3 105,066 + -0.0 105,066 + +1.0 105,067 - -0.0 105,067 - +3.2 105,067 - +1.9 105,067 - +1.7 105,067 - +1.6 105,067 - -0.0 105,279 + Rru_A0091 0.50 +0.9 105,280 - Rru_A0091 0.50 -0.0 105,280 - Rru_A0091 0.50 -0.0
Or see this region's nucleotide sequence