Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0070 and Rru_A0071 are separated by 327 nucleotides Rru_A0071 and Rru_A0072 are separated by 101 nucleotides
Rru_A0070: Rru_A0070 - Protein of unknown function DUF6, transmembrane (NCBI), at 81,316 to 82,311
_A0070
Rru_A0071: Rru_A0071 - hypothetical protein (NCBI), at 82,639 to 82,902
_A0071
Rru_A0072: Rru_A0072 - chaperone protein Hsp90 (NCBI), at 83,004 to 84,884
_A0072
Position (kb) 82
83 Strain fitness (log2 ratio) -1
0
1
2 at 81.729 kb on - strand, within Rru_A0070 at 81.729 kb on - strand, within Rru_A0070 at 81.729 kb on - strand, within Rru_A0070 at 81.761 kb on + strand, within Rru_A0070 at 81.762 kb on - strand, within Rru_A0070 at 81.877 kb on + strand, within Rru_A0070 at 81.877 kb on + strand, within Rru_A0070 at 81.877 kb on + strand, within Rru_A0070 at 81.877 kb on + strand, within Rru_A0070 at 82.135 kb on - strand, within Rru_A0070 at 82.165 kb on + strand, within Rru_A0070 at 82.165 kb on + strand, within Rru_A0070 at 82.166 kb on - strand, within Rru_A0070 at 82.166 kb on - strand, within Rru_A0070 at 82.166 kb on - strand, within Rru_A0070 at 82.166 kb on - strand, within Rru_A0070 at 82.326 kb on - strand at 82.329 kb on - strand at 82.329 kb on - strand at 82.386 kb on + strand at 82.386 kb on + strand at 82.387 kb on - strand at 82.387 kb on - strand at 82.396 kb on - strand at 82.396 kb on - strand at 82.621 kb on - strand at 82.621 kb on - strand at 82.659 kb on + strand at 82.659 kb on + strand at 82.660 kb on - strand at 82.660 kb on - strand at 82.734 kb on + strand, within Rru_A0071 at 82.734 kb on + strand, within Rru_A0071 at 82.735 kb on - strand, within Rru_A0071 at 82.735 kb on - strand, within Rru_A0071 at 82.735 kb on - strand, within Rru_A0071 at 82.735 kb on - strand, within Rru_A0071 at 82.753 kb on - strand, within Rru_A0071 at 82.765 kb on + strand, within Rru_A0071 at 82.765 kb on + strand, within Rru_A0071 at 82.765 kb on + strand, within Rru_A0071 at 83.005 kb on + strand at 83.005 kb on + strand at 83.006 kb on - strand at 83.006 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 81,729 - Rru_A0070 0.41 +0.3 81,729 - Rru_A0070 0.41 +1.3 81,729 - Rru_A0070 0.41 -0.0 81,761 + Rru_A0070 0.45 -0.0 81,762 - Rru_A0070 0.45 +1.0 81,877 + Rru_A0070 0.56 +1.4 81,877 + Rru_A0070 0.56 -0.0 81,877 + Rru_A0070 0.56 +0.3 81,877 + Rru_A0070 0.56 +0.7 82,135 - Rru_A0070 0.82 +1.5 82,165 + Rru_A0070 0.85 -0.0 82,165 + Rru_A0070 0.85 +0.9 82,166 - Rru_A0070 0.85 +1.2 82,166 - Rru_A0070 0.85 -0.0 82,166 - Rru_A0070 0.85 +1.1 82,166 - Rru_A0070 0.85 -0.0 82,326 - +1.0 82,329 - -0.2 82,329 - +0.9 82,386 + +1.4 82,386 + +1.0 82,387 - -0.0 82,387 - -0.0 82,396 - -1.6 82,396 - +1.0 82,621 - -0.0 82,621 - +1.9 82,659 + +0.2 82,659 + +1.0 82,660 - -0.0 82,660 - +0.7 82,734 + Rru_A0071 0.36 -0.0 82,734 + Rru_A0071 0.36 -1.0 82,735 - Rru_A0071 0.36 +1.2 82,735 - Rru_A0071 0.36 +0.9 82,735 - Rru_A0071 0.36 -0.0 82,735 - Rru_A0071 0.36 +0.7 82,753 - Rru_A0071 0.43 +0.2 82,765 + Rru_A0071 0.48 +0.3 82,765 + Rru_A0071 0.48 +0.8 82,765 + Rru_A0071 0.48 -0.6 83,005 + -0.0 83,005 + +2.3 83,006 - +1.3 83,006 - +2.3
Or see this region's nucleotide sequence