Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0032

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0031 and Rru_A0032 are separated by 66 nucleotidesRru_A0032 and Rru_A0033 overlap by 4 nucleotidesRru_A0033 and Rru_A0034 overlap by 4 nucleotides Rru_A0031: Rru_A0031 - Transcriptional Regulator, LysR family (NCBI), at 34,821 to 35,720 _A0031 Rru_A0032: Rru_A0032 - TPR repeat (NCBI), at 35,787 to 37,271 _A0032 Rru_A0033: Rru_A0033 - Cytochrome C biogenesis protein (NCBI), at 37,268 to 37,780 _A0033 Rru_A0034: Rru_A0034 - Periplasmic protein thiol-disulfide oxidoreductase DsbE (NCBI), at 37,777 to 38,364 _A0034 Position (kb) 35 36 37 38Strain fitness (log2 ratio) -1 0 1 2at 34.991 kb on + strand, within Rru_A0031at 34.992 kb on - strand, within Rru_A0031at 34.992 kb on - strand, within Rru_A0031at 34.992 kb on - strand, within Rru_A0031at 35.025 kb on + strand, within Rru_A0031at 35.025 kb on + strand, within Rru_A0031at 35.026 kb on - strand, within Rru_A0031at 35.069 kb on + strand, within Rru_A0031at 35.424 kb on + strand, within Rru_A0031at 35.489 kb on + strand, within Rru_A0031at 35.490 kb on - strand, within Rru_A0031at 35.490 kb on - strand, within Rru_A0031at 35.490 kb on - strand, within Rru_A0031at 35.544 kb on + strand, within Rru_A0031at 35.544 kb on + strand, within Rru_A0031at 35.544 kb on + strand, within Rru_A0031at 35.544 kb on + strand, within Rru_A0031at 35.545 kb on - strand, within Rru_A0031at 35.547 kb on - strand, within Rru_A0031at 35.788 kb on + strandat 35.788 kb on + strandat 35.874 kb on + strandat 35.875 kb on - strandat 36.112 kb on + strand, within Rru_A0032at 36.112 kb on + strand, within Rru_A0032at 36.112 kb on + strand, within Rru_A0032at 36.113 kb on - strand, within Rru_A0032at 36.652 kb on + strand, within Rru_A0032at 36.653 kb on - strand, within Rru_A0032at 36.653 kb on - strand, within Rru_A0032at 36.653 kb on - strand, within Rru_A0032at 36.919 kb on + strand, within Rru_A0032at 36.960 kb on - strand, within Rru_A0032at 37.163 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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34,991 + Rru_A0031 0.19 +2.0
34,992 - Rru_A0031 0.19 -0.0
34,992 - Rru_A0031 0.19 +0.8
34,992 - Rru_A0031 0.19 +1.8
35,025 + Rru_A0031 0.23 +1.9
35,025 + Rru_A0031 0.23 -0.0
35,026 - Rru_A0031 0.23 -0.0
35,069 + Rru_A0031 0.28 -0.0
35,424 + Rru_A0031 0.67 -0.0
35,489 + Rru_A0031 0.74 -0.0
35,490 - Rru_A0031 0.74 +0.5
35,490 - Rru_A0031 0.74 +0.6
35,490 - Rru_A0031 0.74 +1.3
35,544 + Rru_A0031 0.80 -1.0
35,544 + Rru_A0031 0.80 +0.3
35,544 + Rru_A0031 0.80 +1.2
35,544 + Rru_A0031 0.80 -0.0
35,545 - Rru_A0031 0.80 +0.8
35,547 - Rru_A0031 0.81 -0.0
35,788 + -0.0
35,788 + -0.0
35,874 + +0.8
35,875 - -0.0
36,112 + Rru_A0032 0.22 -0.0
36,112 + Rru_A0032 0.22 -1.0
36,112 + Rru_A0032 0.22 +1.0
36,113 - Rru_A0032 0.22 +0.6
36,652 + Rru_A0032 0.58 -0.0
36,653 - Rru_A0032 0.58 -0.0
36,653 - Rru_A0032 0.58 -0.3
36,653 - Rru_A0032 0.58 -0.0
36,919 + Rru_A0032 0.76 -1.0
36,960 - Rru_A0032 0.79 -0.0
37,163 - -0.0

Or see this region's nucleotide sequence