Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0022 and Rru_A0023 are separated by 170 nucleotides Rru_A0023 and Rru_A0024 are separated by 124 nucleotides Rru_A0024 and Rru_A0025 are separated by 122 nucleotides Rru_A0025 and Rru_A0026 are separated by 14 nucleotides
Rru_A0022: Rru_A0022 - Glutathione S-transferase-like (NCBI), at 27,098 to 27,766
_A0022
Rru_A0023: Rru_A0023 - hypothetical protein (NCBI), at 27,937 to 28,329
_A0023
Rru_A0024: Rru_A0024 - peptidase (NCBI), at 28,454 to 29,599
_A0024
Rru_A0025: Rru_A0025 - hypothetical protein (NCBI), at 29,722 to 30,261
_A0025
Rru_A0026: Rru_A0026 - hypothetical protein (NCBI), at 30,276 to 31,619
_A0026
Position (kb) 28
29
30 Strain fitness (log2 ratio) -1
0
1
2 at 27.764 kb on + strand at 27.765 kb on - strand at 27.765 kb on - strand at 27.843 kb on - strand at 28.048 kb on - strand, within Rru_A0023 at 28.048 kb on - strand, within Rru_A0023 at 28.430 kb on + strand at 28.430 kb on + strand at 28.431 kb on - strand at 28.867 kb on + strand, within Rru_A0024 at 28.867 kb on + strand, within Rru_A0024 at 28.867 kb on + strand, within Rru_A0024 at 29.111 kb on + strand, within Rru_A0024 at 29.111 kb on + strand, within Rru_A0024 at 29.264 kb on - strand, within Rru_A0024 at 29.264 kb on - strand, within Rru_A0024 at 29.264 kb on - strand, within Rru_A0024 at 29.393 kb on - strand, within Rru_A0024 at 29.635 kb on + strand at 29.635 kb on + strand at 29.635 kb on + strand at 29.636 kb on - strand at 29.636 kb on - strand at 29.636 kb on - strand at 29.636 kb on - strand at 29.636 kb on - strand at 29.640 kb on + strand at 29.641 kb on - strand at 29.779 kb on - strand, within Rru_A0025 at 30.110 kb on - strand, within Rru_A0025 at 30.110 kb on - strand, within Rru_A0025 at 30.110 kb on - strand, within Rru_A0025 at 30.110 kb on - strand, within Rru_A0025 at 30.110 kb on - strand, within Rru_A0025 at 30.110 kb on - strand, within Rru_A0025 at 30.271 kb on + strand at 30.271 kb on + strand at 30.271 kb on + strand at 30.271 kb on + strand at 30.271 kb on + strand at 30.272 kb on - strand at 30.378 kb on + strand at 30.378 kb on + strand at 30.379 kb on - strand at 30.379 kb on - strand at 30.379 kb on - strand at 30.379 kb on - strand at 30.379 kb on - strand at 30.379 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 27,764 + -0.0 27,765 - +1.4 27,765 - +1.7 27,843 - +0.1 28,048 - Rru_A0023 0.28 -0.0 28,048 - Rru_A0023 0.28 +0.6 28,430 + -0.0 28,430 + +1.1 28,431 - +1.3 28,867 + Rru_A0024 0.36 -1.0 28,867 + Rru_A0024 0.36 -0.0 28,867 + Rru_A0024 0.36 -0.0 29,111 + Rru_A0024 0.57 -0.0 29,111 + Rru_A0024 0.57 -0.0 29,264 - Rru_A0024 0.71 -0.0 29,264 - Rru_A0024 0.71 -1.0 29,264 - Rru_A0024 0.71 +0.4 29,393 - Rru_A0024 0.82 -1.6 29,635 + -0.0 29,635 + +0.4 29,635 + +1.7 29,636 - +1.2 29,636 - -0.0 29,636 - -0.0 29,636 - -0.0 29,636 - -0.0 29,640 + -0.0 29,641 - +0.7 29,779 - Rru_A0025 0.11 +1.4 30,110 - Rru_A0025 0.72 -0.0 30,110 - Rru_A0025 0.72 -0.0 30,110 - Rru_A0025 0.72 +2.4 30,110 - Rru_A0025 0.72 -0.0 30,110 - Rru_A0025 0.72 +0.1 30,110 - Rru_A0025 0.72 -0.0 30,271 + +1.4 30,271 + -0.0 30,271 + -0.0 30,271 + -0.1 30,271 + -0.0 30,272 - -0.0 30,378 + +1.9 30,378 + +1.3 30,379 - +1.2 30,379 - +1.4 30,379 - +1.4 30,379 - +1.2 30,379 - +0.6 30,379 - -0.0
Or see this region's nucleotide sequence