Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0005

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0004 and Rru_A0005 are separated by 413 nucleotidesRru_A0005 and Rru_A0006 overlap by 14 nucleotides Rru_A0004: Rru_A0004 - DNA gyrase, B subunit (NCBI), at 4,362 to 6,770 _A0004 Rru_A0005: Rru_A0005 - killer suppression protein HigA, putative (NCBI), at 7,184 to 7,528 _A0005 Rru_A0006: Rru_A0006 - Plasmid maintenance system antidote protein (NCBI), at 7,515 to 8,657 _A0006 Position (kb) 7 8Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6.852 kb on + strandat 6.853 kb on - strandat 6.853 kb on - strandat 6.853 kb on - strandat 6.988 kb on - strandat 7.002 kb on + strandat 7.008 kb on - strandat 7.095 kb on - strandat 7.192 kb on + strandat 7.196 kb on + strandat 7.197 kb on - strandat 7.201 kb on + strandat 7.202 kb on - strandat 7.202 kb on - strandat 7.245 kb on + strand, within Rru_A0005at 7.246 kb on - strand, within Rru_A0005at 7.354 kb on + strand, within Rru_A0005at 7.354 kb on + strand, within Rru_A0005at 7.354 kb on + strand, within Rru_A0005at 7.411 kb on + strand, within Rru_A0005at 7.411 kb on + strand, within Rru_A0005at 7.411 kb on + strand, within Rru_A0005at 7.411 kb on + strand, within Rru_A0005at 7.412 kb on - strand, within Rru_A0005at 7.412 kb on - strand, within Rru_A0005at 7.471 kb on + strand, within Rru_A0005at 7.471 kb on + strand, within Rru_A0005at 7.472 kb on - strand, within Rru_A0005at 7.472 kb on - strand, within Rru_A0005at 7.472 kb on - strand, within Rru_A0005at 7.472 kb on - strand, within Rru_A0005at 7.472 kb on - strand, within Rru_A0005at 7.472 kb on - strand, within Rru_A0005at 7.511 kb on + strandat 7.512 kb on - strandat 8.099 kb on + strand, within Rru_A0006at 8.099 kb on + strand, within Rru_A0006at 8.099 kb on + strand, within Rru_A0006at 8.279 kb on + strand, within Rru_A0006at 8.280 kb on - strand, within Rru_A0006

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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6,852 + +1.0
6,853 - -0.0
6,853 - -2.0
6,853 - -0.0
6,988 - +0.6
7,002 + -0.0
7,008 - -0.4
7,095 - +1.6
7,192 + +0.9
7,196 + +0.8
7,197 - -0.0
7,201 + +1.2
7,202 - +0.8
7,202 - -0.0
7,245 + Rru_A0005 0.18 +0.2
7,246 - Rru_A0005 0.18 -0.0
7,354 + Rru_A0005 0.49 -0.0
7,354 + Rru_A0005 0.49 -0.0
7,354 + Rru_A0005 0.49 -0.0
7,411 + Rru_A0005 0.66 +3.2
7,411 + Rru_A0005 0.66 -0.2
7,411 + Rru_A0005 0.66 -0.0
7,411 + Rru_A0005 0.66 -1.0
7,412 - Rru_A0005 0.66 +0.1
7,412 - Rru_A0005 0.66 -0.0
7,471 + Rru_A0005 0.83 -0.0
7,471 + Rru_A0005 0.83 -0.0
7,472 - Rru_A0005 0.83 -0.0
7,472 - Rru_A0005 0.83 +0.7
7,472 - Rru_A0005 0.83 -0.0
7,472 - Rru_A0005 0.83 +2.6
7,472 - Rru_A0005 0.83 +0.5
7,472 - Rru_A0005 0.83 -0.0
7,511 + -1.0
7,512 - +0.3
8,099 + Rru_A0006 0.51 +0.7
8,099 + Rru_A0006 0.51 -2.3
8,099 + Rru_A0006 0.51 -0.0
8,279 + Rru_A0006 0.67 -0.0
8,280 - Rru_A0006 0.67 -0.0

Or see this region's nucleotide sequence