Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0039 and Rru_B0040 are separated by 6 nucleotides Rru_B0040 and Rru_B0041 are separated by 147 nucleotides Rru_B0041 and Rru_B0042 are separated by 34 nucleotides
Rru_B0039: Rru_B0039 - Type I secretion system ATPase, PrtD (NCBI), at 39,009 to 40,766
_B0039
Rru_B0040: Rru_B0040 - Type I secretion membrane fusion protein, HlyD (NCBI), at 40,773 to 42,251
_B0040
Rru_B0041: Rru_B0041 - Transcriptional Regulator, XRE family (NCBI), at 42,399 to 42,710
_B0041
Rru_B0042: Rru_B0042 - hypothetical protein (NCBI), at 42,745 to 43,599
_B0042
Position (kb) 40
41
42
43 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.942 kb on + strand, within Rru_B0039 at 39.942 kb on + strand, within Rru_B0039 at 39.943 kb on - strand, within Rru_B0039 at 39.943 kb on - strand, within Rru_B0039 at 40.257 kb on + strand, within Rru_B0039 at 40.257 kb on + strand, within Rru_B0039 at 40.258 kb on - strand, within Rru_B0039 at 40.258 kb on - strand, within Rru_B0039 at 40.258 kb on - strand, within Rru_B0039 at 40.258 kb on - strand, within Rru_B0039 at 40.258 kb on - strand, within Rru_B0039 at 40.399 kb on - strand, within Rru_B0039 at 40.399 kb on - strand, within Rru_B0039 at 40.399 kb on - strand, within Rru_B0039 at 40.476 kb on + strand, within Rru_B0039 at 40.476 kb on + strand, within Rru_B0039 at 40.476 kb on + strand, within Rru_B0039 at 40.476 kb on + strand, within Rru_B0039 at 40.477 kb on - strand, within Rru_B0039 at 40.477 kb on - strand, within Rru_B0039 at 40.477 kb on - strand, within Rru_B0039 at 40.477 kb on - strand, within Rru_B0039 at 40.477 kb on - strand, within Rru_B0039 at 40.478 kb on + strand, within Rru_B0039 at 40.478 kb on + strand, within Rru_B0039 at 40.478 kb on + strand, within Rru_B0039 at 40.479 kb on - strand, within Rru_B0039 at 40.479 kb on - strand, within Rru_B0039 at 40.604 kb on + strand at 40.605 kb on - strand at 40.605 kb on - strand at 40.605 kb on - strand at 40.605 kb on - strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.784 kb on + strand at 40.784 kb on + strand at 40.784 kb on + strand at 40.785 kb on - strand at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.254 kb on - strand, within Rru_B0040 at 41.254 kb on - strand, within Rru_B0040 at 41.254 kb on - strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.400 kb on - strand, within Rru_B0040 at 41.400 kb on - strand, within Rru_B0040 at 41.400 kb on - strand, within Rru_B0040 at 41.556 kb on + strand, within Rru_B0040 at 41.556 kb on + strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.558 kb on + strand, within Rru_B0040 at 41.559 kb on - strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.628 kb on - strand, within Rru_B0040 at 41.628 kb on - strand, within Rru_B0040 at 41.846 kb on + strand, within Rru_B0040 at 41.846 kb on + strand, within Rru_B0040 at 41.846 kb on + strand, within Rru_B0040 at 42.069 kb on - strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.079 kb on - strand, within Rru_B0040 at 42.079 kb on - strand, within Rru_B0040 at 42.079 kb on - strand, within Rru_B0040 at 42.079 kb on - strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.199 kb on - strand at 42.199 kb on - strand at 42.199 kb on - strand at 42.249 kb on + strand at 42.249 kb on + strand at 42.250 kb on - strand at 42.250 kb on - strand at 42.250 kb on - strand at 42.250 kb on - strand at 42.309 kb on + strand at 42.310 kb on - strand at 42.318 kb on + strand at 42.318 kb on + strand at 42.318 kb on + strand at 42.318 kb on + strand at 42.319 kb on - strand at 42.319 kb on - strand at 42.319 kb on - strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.322 kb on - strand at 42.322 kb on - strand at 42.326 kb on + strand at 42.326 kb on + strand at 42.327 kb on - strand at 42.327 kb on - strand at 42.369 kb on + strand at 42.402 kb on + strand at 42.402 kb on + strand at 42.403 kb on - strand at 42.403 kb on - strand at 42.534 kb on + strand, within Rru_B0041 at 42.537 kb on + strand, within Rru_B0041 at 42.657 kb on + strand, within Rru_B0041 at 42.657 kb on + strand, within Rru_B0041 at 42.657 kb on + strand, within Rru_B0041 at 42.658 kb on - strand, within Rru_B0041 at 42.672 kb on + strand, within Rru_B0041 at 42.672 kb on + strand, within Rru_B0041 at 42.673 kb on - strand, within Rru_B0041 at 42.673 kb on - strand, within Rru_B0041 at 42.673 kb on - strand, within Rru_B0041 at 42.673 kb on - strand, within Rru_B0041 at 42.708 kb on + strand at 42.709 kb on - strand at 42.709 kb on - strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.838 kb on + strand, within Rru_B0042 at 42.839 kb on - strand, within Rru_B0042 at 42.839 kb on - strand, within Rru_B0042 at 42.839 kb on - strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 39,813 + Rru_B0039 0.46 +1.0 39,813 + Rru_B0039 0.46 +1.5 39,813 + Rru_B0039 0.46 +2.2 39,813 + Rru_B0039 0.46 +1.7 39,813 + Rru_B0039 0.46 +0.2 39,814 - Rru_B0039 0.46 +0.2 39,814 - Rru_B0039 0.46 +0.2 39,814 - Rru_B0039 0.46 +2.0 39,814 - Rru_B0039 0.46 +1.7 39,942 + Rru_B0039 0.53 +0.2 39,942 + Rru_B0039 0.53 +0.5 39,943 - Rru_B0039 0.53 +1.2 39,943 - Rru_B0039 0.53 +1.4 40,257 + Rru_B0039 0.71 +0.8 40,257 + Rru_B0039 0.71 +1.0 40,258 - Rru_B0039 0.71 -1.4 40,258 - Rru_B0039 0.71 +0.2 40,258 - Rru_B0039 0.71 -0.8 40,258 - Rru_B0039 0.71 +1.5 40,258 - Rru_B0039 0.71 +0.2 40,399 - Rru_B0039 0.79 +1.8 40,399 - Rru_B0039 0.79 +0.2 40,399 - Rru_B0039 0.79 +0.9 40,476 + Rru_B0039 0.83 +0.9 40,476 + Rru_B0039 0.83 -1.4 40,476 + Rru_B0039 0.83 +0.2 40,476 + Rru_B0039 0.83 +1.2 40,477 - Rru_B0039 0.84 +1.4 40,477 - Rru_B0039 0.84 +1.1 40,477 - Rru_B0039 0.84 +1.0 40,477 - Rru_B0039 0.84 -0.8 40,477 - Rru_B0039 0.84 +1.0 40,478 + Rru_B0039 0.84 +0.9 40,478 + Rru_B0039 0.84 -0.5 40,478 + Rru_B0039 0.84 +0.2 40,479 - Rru_B0039 0.84 +0.2 40,479 - Rru_B0039 0.84 +1.0 40,604 + +0.9 40,605 - +0.2 40,605 - +0.5 40,605 - +0.2 40,605 - +4.4 40,764 + +1.3 40,764 + +0.2 40,764 + +1.2 40,764 + +0.2 40,764 + +0.1 40,764 + +1.6 40,764 + +0.8 40,765 - +0.7 40,765 - +0.2 40,765 - +3.7 40,765 - +1.5 40,765 - +1.8 40,765 - +0.9 40,765 - +1.4 40,765 - +0.2 40,765 - +3.0 40,784 + +0.2 40,784 + +0.2 40,784 + +1.1 40,785 - +0.2 41,253 + Rru_B0040 0.32 +1.9 41,253 + Rru_B0040 0.32 +2.0 41,253 + Rru_B0040 0.32 +0.9 41,253 + Rru_B0040 0.32 +1.5 41,253 + Rru_B0040 0.32 +0.5 41,253 + Rru_B0040 0.32 -1.4 41,253 + Rru_B0040 0.32 +1.4 41,253 + Rru_B0040 0.32 +0.3 41,254 - Rru_B0040 0.33 +0.2 41,254 - Rru_B0040 0.33 +1.4 41,254 - Rru_B0040 0.33 +1.3 41,399 + Rru_B0040 0.42 +1.6 41,399 + Rru_B0040 0.42 +0.2 41,399 + Rru_B0040 0.42 +0.2 41,399 + Rru_B0040 0.42 +0.2 41,399 + Rru_B0040 0.42 +0.2 41,399 + Rru_B0040 0.42 +0.2 41,399 + Rru_B0040 0.42 +1.7 41,400 - Rru_B0040 0.42 -1.4 41,400 - Rru_B0040 0.42 +1.3 41,400 - Rru_B0040 0.42 +0.2 41,556 + Rru_B0040 0.53 +0.8 41,556 + Rru_B0040 0.53 +2.7 41,557 - Rru_B0040 0.53 +1.3 41,557 - Rru_B0040 0.53 +0.2 41,557 - Rru_B0040 0.53 +1.7 41,557 - Rru_B0040 0.53 +1.4 41,557 - Rru_B0040 0.53 -0.8 41,557 - Rru_B0040 0.53 +1.4 41,557 - Rru_B0040 0.53 +0.9 41,558 + Rru_B0040 0.53 +1.8 41,559 - Rru_B0040 0.53 +0.2 41,627 + Rru_B0040 0.58 +0.2 41,627 + Rru_B0040 0.58 +1.4 41,627 + Rru_B0040 0.58 +0.9 41,627 + Rru_B0040 0.58 +0.2 41,627 + Rru_B0040 0.58 +1.3 41,628 - Rru_B0040 0.58 -0.8 41,628 - Rru_B0040 0.58 +1.0 41,846 + Rru_B0040 0.73 +1.3 41,846 + Rru_B0040 0.73 +1.0 41,846 + Rru_B0040 0.73 -0.8 42,069 - Rru_B0040 0.88 +0.2 42,078 + Rru_B0040 0.88 +0.2 42,078 + Rru_B0040 0.88 +0.2 42,078 + Rru_B0040 0.88 +4.8 42,078 + Rru_B0040 0.88 +1.2 42,078 + Rru_B0040 0.88 +1.0 42,079 - Rru_B0040 0.88 +0.5 42,079 - Rru_B0040 0.88 +0.3 42,079 - Rru_B0040 0.88 +1.3 42,079 - Rru_B0040 0.88 +0.6 42,081 + Rru_B0040 0.88 +0.9 42,081 + Rru_B0040 0.88 +0.2 42,081 + Rru_B0040 0.88 +2.2 42,081 + Rru_B0040 0.88 +0.2 42,081 + Rru_B0040 0.88 +1.3 42,081 + Rru_B0040 0.88 +1.5 42,081 + Rru_B0040 0.88 +1.6 42,082 - Rru_B0040 0.89 +0.0 42,082 - Rru_B0040 0.89 +1.9 42,082 - Rru_B0040 0.89 +1.2 42,082 - Rru_B0040 0.89 +1.6 42,082 - Rru_B0040 0.89 +2.0 42,082 - Rru_B0040 0.89 -1.4 42,199 - +1.7 42,199 - +1.0 42,199 - +0.2 42,249 + +0.2 42,249 + +1.0 42,250 - +1.2 42,250 - +0.8 42,250 - +0.6 42,250 - +0.2 42,309 + +0.2 42,310 - +0.5 42,318 + +0.9 42,318 + +2.6 42,318 + +0.5 42,318 + +0.7 42,319 - +1.2 42,319 - +0.2 42,319 - +1.5 42,321 + +0.6 42,321 + +0.2 42,321 + +0.2 42,322 - +0.2 42,322 - +2.9 42,326 + +0.7 42,326 + +0.2 42,327 - -0.8 42,327 - +0.2 42,369 + +1.0 42,402 + +0.1 42,402 + +1.2 42,403 - +0.2 42,403 - +0.2 42,534 + Rru_B0041 0.43 +0.3 42,537 + Rru_B0041 0.44 +2.2 42,657 + Rru_B0041 0.83 +0.9 42,657 + Rru_B0041 0.83 +1.5 42,657 + Rru_B0041 0.83 +1.3 42,658 - Rru_B0041 0.83 +0.2 42,672 + Rru_B0041 0.88 +0.2 42,672 + Rru_B0041 0.88 +1.6 42,673 - Rru_B0041 0.88 +1.6 42,673 - Rru_B0041 0.88 +0.9 42,673 - Rru_B0041 0.88 +1.6 42,673 - Rru_B0041 0.88 +1.9 42,708 + +0.7 42,709 - +2.0 42,709 - +1.3 42,727 + +3.2 42,727 + +0.2 42,727 + +0.2 42,727 + +0.2 42,727 + -1.4 42,727 + +3.0 42,728 - +0.2 42,728 - +1.7 42,728 - +0.6 42,728 - +0.2 42,728 - -0.8 42,728 - +3.8 42,728 - +0.2 42,728 - +0.9 42,728 - +2.1 42,728 - +1.6 42,728 - +0.2 42,728 - +0.8 42,728 - +0.6 42,838 + Rru_B0042 0.11 +1.0 42,839 - Rru_B0042 0.11 +1.4 42,839 - Rru_B0042 0.11 +1.0 42,839 - Rru_B0042 0.11 +0.2 42,928 + Rru_B0042 0.21 +0.7 42,928 + Rru_B0042 0.21 +0.4 42,928 + Rru_B0042 0.21 +1.1 42,928 + Rru_B0042 0.21 -1.3 42,928 + Rru_B0042 0.21 +2.7 42,928 + Rru_B0042 0.21 +2.3 42,929 - Rru_B0042 0.22 +2.7 42,929 - Rru_B0042 0.22 +2.5 42,929 - Rru_B0042 0.22 -0.4 42,929 - Rru_B0042 0.22 +1.7
Or see this region's nucleotide sequence