Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0038 and Rru_B0039 are separated by 122 nucleotides Rru_B0039 and Rru_B0040 are separated by 6 nucleotides
Rru_B0038: Rru_B0038 - dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI), at 38,320 to 38,886
_B0038
Rru_B0039: Rru_B0039 - Type I secretion system ATPase, PrtD (NCBI), at 39,009 to 40,766
_B0039
Rru_B0040: Rru_B0040 - Type I secretion membrane fusion protein, HlyD (NCBI), at 40,773 to 42,251
_B0040
Position (kb) 39
40
41 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 38.009 kb on - strand at 38.009 kb on - strand at 38.034 kb on + strand at 38.035 kb on - strand at 38.035 kb on - strand at 38.035 kb on - strand at 38.036 kb on + strand at 38.036 kb on + strand at 38.036 kb on + strand at 38.037 kb on - strand at 38.037 kb on - strand at 38.037 kb on - strand at 38.037 kb on - strand at 38.054 kb on + strand at 38.054 kb on + strand at 38.054 kb on + strand at 38.054 kb on + strand at 38.054 kb on + strand at 38.054 kb on + strand at 38.055 kb on - strand at 38.058 kb on + strand at 38.058 kb on + strand at 38.058 kb on + strand at 38.059 kb on - strand at 38.059 kb on - strand at 38.163 kb on + strand at 38.163 kb on + strand at 38.178 kb on + strand at 38.231 kb on + strand at 38.251 kb on + strand at 38.251 kb on + strand at 38.252 kb on - strand at 38.252 kb on - strand at 38.721 kb on + strand, within Rru_B0038 at 38.879 kb on - strand at 38.879 kb on - strand at 38.879 kb on - strand at 38.879 kb on - strand at 38.885 kb on - strand at 38.909 kb on - strand at 38.937 kb on + strand at 38.937 kb on + strand at 38.937 kb on + strand at 38.938 kb on - strand at 38.938 kb on - strand at 38.938 kb on - strand at 38.986 kb on + strand at 39.122 kb on + strand at 39.153 kb on + strand at 39.153 kb on + strand at 39.154 kb on - strand at 39.168 kb on + strand at 39.169 kb on - strand at 39.329 kb on + strand, within Rru_B0039 at 39.329 kb on + strand, within Rru_B0039 at 39.329 kb on + strand, within Rru_B0039 at 39.330 kb on - strand, within Rru_B0039 at 39.330 kb on - strand, within Rru_B0039 at 39.330 kb on - strand, within Rru_B0039 at 39.372 kb on + strand, within Rru_B0039 at 39.372 kb on + strand, within Rru_B0039 at 39.372 kb on + strand, within Rru_B0039 at 39.373 kb on - strand, within Rru_B0039 at 39.373 kb on - strand, within Rru_B0039 at 39.375 kb on - strand, within Rru_B0039 at 39.375 kb on - strand, within Rru_B0039 at 39.375 kb on - strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.942 kb on + strand, within Rru_B0039 at 39.942 kb on + strand, within Rru_B0039 at 39.943 kb on - strand, within Rru_B0039 at 39.943 kb on - strand, within Rru_B0039 at 40.257 kb on + strand, within Rru_B0039 at 40.257 kb on + strand, within Rru_B0039 at 40.258 kb on - strand, within Rru_B0039 at 40.258 kb on - strand, within Rru_B0039 at 40.258 kb on - strand, within Rru_B0039 at 40.258 kb on - strand, within Rru_B0039 at 40.258 kb on - strand, within Rru_B0039 at 40.399 kb on - strand, within Rru_B0039 at 40.399 kb on - strand, within Rru_B0039 at 40.399 kb on - strand, within Rru_B0039 at 40.476 kb on + strand, within Rru_B0039 at 40.476 kb on + strand, within Rru_B0039 at 40.476 kb on + strand, within Rru_B0039 at 40.476 kb on + strand, within Rru_B0039 at 40.477 kb on - strand, within Rru_B0039 at 40.477 kb on - strand, within Rru_B0039 at 40.477 kb on - strand, within Rru_B0039 at 40.477 kb on - strand, within Rru_B0039 at 40.477 kb on - strand, within Rru_B0039 at 40.478 kb on + strand, within Rru_B0039 at 40.478 kb on + strand, within Rru_B0039 at 40.478 kb on + strand, within Rru_B0039 at 40.479 kb on - strand, within Rru_B0039 at 40.479 kb on - strand, within Rru_B0039 at 40.604 kb on + strand at 40.605 kb on - strand at 40.605 kb on - strand at 40.605 kb on - strand at 40.605 kb on - strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.784 kb on + strand at 40.784 kb on + strand at 40.784 kb on + strand at 40.785 kb on - strand at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.254 kb on - strand, within Rru_B0040 at 41.254 kb on - strand, within Rru_B0040 at 41.254 kb on - strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.400 kb on - strand, within Rru_B0040 at 41.400 kb on - strand, within Rru_B0040 at 41.400 kb on - strand, within Rru_B0040 at 41.556 kb on + strand, within Rru_B0040 at 41.556 kb on + strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.558 kb on + strand, within Rru_B0040 at 41.559 kb on - strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.628 kb on - strand, within Rru_B0040 at 41.628 kb on - strand, within Rru_B0040
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 38,009 - +1.0 38,009 - +1.0 38,034 + +0.6 38,035 - +0.2 38,035 - +0.2 38,035 - +0.3 38,036 + +0.9 38,036 + +0.2 38,036 + +0.8 38,037 - -1.4 38,037 - -0.7 38,037 - +0.2 38,037 - -0.8 38,054 + +1.6 38,054 + +1.5 38,054 + +0.7 38,054 + -0.8 38,054 + +1.2 38,054 + +1.5 38,055 - +2.1 38,058 + +1.1 38,058 + +1.2 38,058 + -0.4 38,059 - -1.4 38,059 - +0.2 38,163 + +1.6 38,163 + +0.2 38,178 + +0.2 38,231 + +1.5 38,251 + +0.4 38,251 + +1.1 38,252 - +1.3 38,252 - +0.2 38,721 + Rru_B0038 0.71 +1.9 38,879 - +1.1 38,879 - +1.4 38,879 - +1.7 38,879 - +0.2 38,885 - +0.2 38,909 - +1.0 38,937 + +1.2 38,937 + +0.8 38,937 + +1.3 38,938 - +0.2 38,938 - +0.2 38,938 - +0.8 38,986 + +3.1 39,122 + +3.3 39,153 + +1.6 39,153 + +0.2 39,154 - +1.1 39,168 + +3.0 39,169 - +0.2 39,329 + Rru_B0039 0.18 -0.8 39,329 + Rru_B0039 0.18 +1.8 39,329 + Rru_B0039 0.18 +1.7 39,330 - Rru_B0039 0.18 +2.2 39,330 - Rru_B0039 0.18 +1.9 39,330 - Rru_B0039 0.18 +1.6 39,372 + Rru_B0039 0.21 +2.1 39,372 + Rru_B0039 0.21 +1.4 39,372 + Rru_B0039 0.21 +0.3 39,373 - Rru_B0039 0.21 +1.6 39,373 - Rru_B0039 0.21 +1.7 39,375 - Rru_B0039 0.21 +1.6 39,375 - Rru_B0039 0.21 +0.2 39,375 - Rru_B0039 0.21 +1.6 39,615 + Rru_B0039 0.34 +1.3 39,615 + Rru_B0039 0.34 +1.4 39,615 + Rru_B0039 0.34 +1.2 39,615 + Rru_B0039 0.34 +0.2 39,615 + Rru_B0039 0.34 -0.8 39,615 + Rru_B0039 0.34 +0.2 39,615 + Rru_B0039 0.34 +1.0 39,615 + Rru_B0039 0.34 +0.2 39,615 + Rru_B0039 0.34 +1.2 39,615 + Rru_B0039 0.34 +1.3 39,615 + Rru_B0039 0.34 +1.5 39,615 + Rru_B0039 0.34 +0.4 39,615 + Rru_B0039 0.34 +1.5 39,615 + Rru_B0039 0.34 +0.2 39,616 - Rru_B0039 0.35 +0.2 39,616 - Rru_B0039 0.35 +2.3 39,616 - Rru_B0039 0.35 +1.5 39,616 - Rru_B0039 0.35 +0.0 39,616 - Rru_B0039 0.35 +0.7 39,616 - Rru_B0039 0.35 +0.2 39,616 - Rru_B0039 0.35 +1.6 39,813 + Rru_B0039 0.46 +1.0 39,813 + Rru_B0039 0.46 +1.5 39,813 + Rru_B0039 0.46 +2.2 39,813 + Rru_B0039 0.46 +1.7 39,813 + Rru_B0039 0.46 +0.2 39,814 - Rru_B0039 0.46 +0.2 39,814 - Rru_B0039 0.46 +0.2 39,814 - Rru_B0039 0.46 +2.0 39,814 - Rru_B0039 0.46 +1.7 39,942 + Rru_B0039 0.53 +0.2 39,942 + Rru_B0039 0.53 +0.5 39,943 - Rru_B0039 0.53 +1.2 39,943 - Rru_B0039 0.53 +1.4 40,257 + Rru_B0039 0.71 +0.8 40,257 + Rru_B0039 0.71 +1.0 40,258 - Rru_B0039 0.71 -1.4 40,258 - Rru_B0039 0.71 +0.2 40,258 - Rru_B0039 0.71 -0.8 40,258 - Rru_B0039 0.71 +1.5 40,258 - Rru_B0039 0.71 +0.2 40,399 - Rru_B0039 0.79 +1.8 40,399 - Rru_B0039 0.79 +0.2 40,399 - Rru_B0039 0.79 +0.9 40,476 + Rru_B0039 0.83 +0.9 40,476 + Rru_B0039 0.83 -1.4 40,476 + Rru_B0039 0.83 +0.2 40,476 + Rru_B0039 0.83 +1.2 40,477 - Rru_B0039 0.84 +1.4 40,477 - Rru_B0039 0.84 +1.1 40,477 - Rru_B0039 0.84 +1.0 40,477 - Rru_B0039 0.84 -0.8 40,477 - Rru_B0039 0.84 +1.0 40,478 + Rru_B0039 0.84 +0.9 40,478 + Rru_B0039 0.84 -0.5 40,478 + Rru_B0039 0.84 +0.2 40,479 - Rru_B0039 0.84 +0.2 40,479 - Rru_B0039 0.84 +1.0 40,604 + +0.9 40,605 - +0.2 40,605 - +0.5 40,605 - +0.2 40,605 - +4.4 40,764 + +1.3 40,764 + +0.2 40,764 + +1.2 40,764 + +0.2 40,764 + +0.1 40,764 + +1.6 40,764 + +0.8 40,765 - +0.7 40,765 - +0.2 40,765 - +3.7 40,765 - +1.5 40,765 - +1.8 40,765 - +0.9 40,765 - +1.4 40,765 - +0.2 40,765 - +3.0 40,784 + +0.2 40,784 + +0.2 40,784 + +1.1 40,785 - +0.2 41,253 + Rru_B0040 0.32 +1.9 41,253 + Rru_B0040 0.32 +2.0 41,253 + Rru_B0040 0.32 +0.9 41,253 + Rru_B0040 0.32 +1.5 41,253 + Rru_B0040 0.32 +0.5 41,253 + Rru_B0040 0.32 -1.4 41,253 + Rru_B0040 0.32 +1.4 41,253 + Rru_B0040 0.32 +0.3 41,254 - Rru_B0040 0.33 +0.2 41,254 - Rru_B0040 0.33 +1.4 41,254 - Rru_B0040 0.33 +1.3 41,399 + Rru_B0040 0.42 +1.6 41,399 + Rru_B0040 0.42 +0.2 41,399 + Rru_B0040 0.42 +0.2 41,399 + Rru_B0040 0.42 +0.2 41,399 + Rru_B0040 0.42 +0.2 41,399 + Rru_B0040 0.42 +0.2 41,399 + Rru_B0040 0.42 +1.7 41,400 - Rru_B0040 0.42 -1.4 41,400 - Rru_B0040 0.42 +1.3 41,400 - Rru_B0040 0.42 +0.2 41,556 + Rru_B0040 0.53 +0.8 41,556 + Rru_B0040 0.53 +2.7 41,557 - Rru_B0040 0.53 +1.3 41,557 - Rru_B0040 0.53 +0.2 41,557 - Rru_B0040 0.53 +1.7 41,557 - Rru_B0040 0.53 +1.4 41,557 - Rru_B0040 0.53 -0.8 41,557 - Rru_B0040 0.53 +1.4 41,557 - Rru_B0040 0.53 +0.9 41,558 + Rru_B0040 0.53 +1.8 41,559 - Rru_B0040 0.53 +0.2 41,627 + Rru_B0040 0.58 +0.2 41,627 + Rru_B0040 0.58 +1.4 41,627 + Rru_B0040 0.58 +0.9 41,627 + Rru_B0040 0.58 +0.2 41,627 + Rru_B0040 0.58 +1.3 41,628 - Rru_B0040 0.58 -0.8 41,628 - Rru_B0040 0.58 +1.0
Or see this region's nucleotide sequence