Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0037 and Rru_B0038 are separated by 454 nucleotides Rru_B0038 and Rru_B0039 are separated by 122 nucleotides
Rru_B0037: Rru_B0037 - Hemolysin-type calcium-binding region (NCBI), at 35,373 to 37,865
_B0037
Rru_B0038: Rru_B0038 - dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI), at 38,320 to 38,886
_B0038
Rru_B0039: Rru_B0039 - Type I secretion system ATPase, PrtD (NCBI), at 39,009 to 40,766
_B0039
Position (kb) 38
39 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 37.328 kb on + strand, within Rru_B0037 at 37.328 kb on + strand, within Rru_B0037 at 37.328 kb on + strand, within Rru_B0037 at 37.328 kb on + strand, within Rru_B0037 at 37.328 kb on + strand, within Rru_B0037 at 37.328 kb on + strand, within Rru_B0037 at 37.329 kb on - strand, within Rru_B0037 at 37.329 kb on - strand, within Rru_B0037 at 37.329 kb on - strand, within Rru_B0037 at 37.329 kb on - strand, within Rru_B0037 at 37.340 kb on + strand, within Rru_B0037 at 37.340 kb on + strand, within Rru_B0037 at 37.340 kb on + strand, within Rru_B0037 at 37.340 kb on + strand, within Rru_B0037 at 37.340 kb on + strand, within Rru_B0037 at 37.340 kb on + strand, within Rru_B0037 at 37.340 kb on + strand, within Rru_B0037 at 37.341 kb on - strand, within Rru_B0037 at 37.341 kb on - strand, within Rru_B0037 at 37.341 kb on - strand, within Rru_B0037 at 37.341 kb on - strand, within Rru_B0037 at 37.341 kb on - strand, within Rru_B0037 at 37.344 kb on - strand, within Rru_B0037 at 37.344 kb on - strand, within Rru_B0037 at 37.366 kb on + strand, within Rru_B0037 at 37.366 kb on + strand, within Rru_B0037 at 37.367 kb on - strand, within Rru_B0037 at 37.421 kb on + strand, within Rru_B0037 at 37.422 kb on - strand, within Rru_B0037 at 37.422 kb on - strand, within Rru_B0037 at 37.422 kb on - strand, within Rru_B0037 at 37.429 kb on + strand, within Rru_B0037 at 37.429 kb on + strand, within Rru_B0037 at 37.429 kb on + strand, within Rru_B0037 at 37.430 kb on - strand, within Rru_B0037 at 37.430 kb on - strand, within Rru_B0037 at 37.507 kb on + strand, within Rru_B0037 at 37.507 kb on + strand, within Rru_B0037 at 37.507 kb on + strand, within Rru_B0037 at 37.507 kb on + strand, within Rru_B0037 at 37.507 kb on + strand, within Rru_B0037 at 37.508 kb on - strand, within Rru_B0037 at 37.570 kb on + strand, within Rru_B0037 at 37.570 kb on + strand, within Rru_B0037 at 37.570 kb on + strand, within Rru_B0037 at 37.570 kb on + strand, within Rru_B0037 at 37.570 kb on + strand, within Rru_B0037 at 37.570 kb on + strand, within Rru_B0037 at 37.570 kb on + strand, within Rru_B0037 at 37.571 kb on - strand, within Rru_B0037 at 37.571 kb on - strand, within Rru_B0037 at 37.571 kb on - strand, within Rru_B0037 at 37.571 kb on - strand, within Rru_B0037 at 37.571 kb on - strand, within Rru_B0037 at 37.571 kb on - strand, within Rru_B0037 at 37.571 kb on - strand, within Rru_B0037 at 37.571 kb on - strand, within Rru_B0037 at 37.631 kb on - strand at 37.708 kb on + strand at 37.708 kb on + strand at 37.709 kb on - strand at 37.709 kb on - strand at 37.709 kb on - strand at 37.711 kb on + strand at 37.711 kb on + strand at 37.711 kb on + strand at 37.711 kb on + strand at 37.712 kb on - strand at 37.712 kb on - strand at 37.726 kb on + strand at 37.726 kb on + strand at 37.726 kb on + strand at 37.726 kb on + strand at 37.727 kb on - strand at 37.727 kb on - strand at 37.727 kb on - strand at 37.727 kb on - strand at 37.727 kb on - strand at 37.727 kb on - strand at 37.727 kb on - strand at 37.768 kb on + strand at 37.768 kb on + strand at 37.768 kb on + strand at 37.768 kb on + strand at 37.768 kb on + strand at 37.768 kb on + strand at 37.769 kb on - strand at 37.769 kb on - strand at 37.769 kb on - strand at 37.769 kb on - strand at 37.837 kb on + strand at 37.838 kb on - strand at 37.840 kb on + strand at 37.840 kb on + strand at 37.840 kb on + strand at 37.840 kb on + strand at 37.841 kb on - strand at 37.841 kb on - strand at 37.841 kb on - strand at 37.851 kb on - strand at 37.870 kb on + strand at 37.871 kb on - strand at 37.897 kb on + strand at 37.898 kb on - strand at 37.898 kb on - strand at 37.898 kb on - strand at 38.005 kb on + strand at 38.006 kb on - strand at 38.006 kb on - strand at 38.008 kb on + strand at 38.008 kb on + strand at 38.008 kb on + strand at 38.008 kb on + strand at 38.009 kb on - strand at 38.009 kb on - strand at 38.034 kb on + strand at 38.035 kb on - strand at 38.035 kb on - strand at 38.035 kb on - strand at 38.036 kb on + strand at 38.036 kb on + strand at 38.036 kb on + strand at 38.037 kb on - strand at 38.037 kb on - strand at 38.037 kb on - strand at 38.037 kb on - strand at 38.054 kb on + strand at 38.054 kb on + strand at 38.054 kb on + strand at 38.054 kb on + strand at 38.054 kb on + strand at 38.054 kb on + strand at 38.055 kb on - strand at 38.058 kb on + strand at 38.058 kb on + strand at 38.058 kb on + strand at 38.059 kb on - strand at 38.059 kb on - strand at 38.163 kb on + strand at 38.163 kb on + strand at 38.178 kb on + strand at 38.231 kb on + strand at 38.251 kb on + strand at 38.251 kb on + strand at 38.252 kb on - strand at 38.252 kb on - strand at 38.721 kb on + strand, within Rru_B0038 at 38.879 kb on - strand at 38.879 kb on - strand at 38.879 kb on - strand at 38.879 kb on - strand at 38.885 kb on - strand at 38.909 kb on - strand at 38.937 kb on + strand at 38.937 kb on + strand at 38.937 kb on + strand at 38.938 kb on - strand at 38.938 kb on - strand at 38.938 kb on - strand at 38.986 kb on + strand at 39.122 kb on + strand at 39.153 kb on + strand at 39.153 kb on + strand at 39.154 kb on - strand at 39.168 kb on + strand at 39.169 kb on - strand at 39.329 kb on + strand, within Rru_B0039 at 39.329 kb on + strand, within Rru_B0039 at 39.329 kb on + strand, within Rru_B0039 at 39.330 kb on - strand, within Rru_B0039 at 39.330 kb on - strand, within Rru_B0039 at 39.330 kb on - strand, within Rru_B0039 at 39.372 kb on + strand, within Rru_B0039 at 39.372 kb on + strand, within Rru_B0039 at 39.372 kb on + strand, within Rru_B0039 at 39.373 kb on - strand, within Rru_B0039 at 39.373 kb on - strand, within Rru_B0039 at 39.375 kb on - strand, within Rru_B0039 at 39.375 kb on - strand, within Rru_B0039 at 39.375 kb on - strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 37,328 + Rru_B0037 0.78 +1.1 37,328 + Rru_B0037 0.78 +2.6 37,328 + Rru_B0037 0.78 -2.2 37,328 + Rru_B0037 0.78 +1.5 37,328 + Rru_B0037 0.78 -1.4 37,328 + Rru_B0037 0.78 +0.2 37,329 - Rru_B0037 0.78 +0.2 37,329 - Rru_B0037 0.78 +0.8 37,329 - Rru_B0037 0.78 +0.9 37,329 - Rru_B0037 0.78 +1.4 37,340 + Rru_B0037 0.79 -0.8 37,340 + Rru_B0037 0.79 +0.7 37,340 + Rru_B0037 0.79 +0.2 37,340 + Rru_B0037 0.79 -0.8 37,340 + Rru_B0037 0.79 +0.2 37,340 + Rru_B0037 0.79 +0.3 37,340 + Rru_B0037 0.79 +0.2 37,341 - Rru_B0037 0.79 +0.2 37,341 - Rru_B0037 0.79 +0.2 37,341 - Rru_B0037 0.79 +0.2 37,341 - Rru_B0037 0.79 +2.6 37,341 - Rru_B0037 0.79 +0.2 37,344 - Rru_B0037 0.79 +1.4 37,344 - Rru_B0037 0.79 +0.2 37,366 + Rru_B0037 0.80 +0.8 37,366 + Rru_B0037 0.80 +1.0 37,367 - Rru_B0037 0.80 +0.2 37,421 + Rru_B0037 0.82 +0.9 37,422 - Rru_B0037 0.82 +1.9 37,422 - Rru_B0037 0.82 +0.2 37,422 - Rru_B0037 0.82 +0.2 37,429 + Rru_B0037 0.82 -0.8 37,429 + Rru_B0037 0.82 +0.2 37,429 + Rru_B0037 0.82 +2.4 37,430 - Rru_B0037 0.83 +1.1 37,430 - Rru_B0037 0.83 +0.2 37,507 + Rru_B0037 0.86 +3.2 37,507 + Rru_B0037 0.86 +2.2 37,507 + Rru_B0037 0.86 +0.9 37,507 + Rru_B0037 0.86 +0.3 37,507 + Rru_B0037 0.86 +2.5 37,508 - Rru_B0037 0.86 +0.2 37,570 + Rru_B0037 0.88 +1.3 37,570 + Rru_B0037 0.88 -0.8 37,570 + Rru_B0037 0.88 +1.1 37,570 + Rru_B0037 0.88 +0.2 37,570 + Rru_B0037 0.88 -0.6 37,570 + Rru_B0037 0.88 -0.8 37,570 + Rru_B0037 0.88 +0.6 37,571 - Rru_B0037 0.88 +1.8 37,571 - Rru_B0037 0.88 +2.4 37,571 - Rru_B0037 0.88 +0.2 37,571 - Rru_B0037 0.88 +1.4 37,571 - Rru_B0037 0.88 +1.6 37,571 - Rru_B0037 0.88 +0.2 37,571 - Rru_B0037 0.88 +1.3 37,571 - Rru_B0037 0.88 +1.2 37,631 - +1.1 37,708 + +0.2 37,708 + +1.2 37,709 - +0.5 37,709 - +1.2 37,709 - +1.7 37,711 + +0.2 37,711 + +1.1 37,711 + +0.2 37,711 + +0.2 37,712 - +2.3 37,712 - +0.5 37,726 + -1.4 37,726 + +2.6 37,726 + +0.7 37,726 + -0.8 37,727 - +0.0 37,727 - +0.2 37,727 - +0.2 37,727 - +0.2 37,727 - +0.9 37,727 - -0.8 37,727 - +0.2 37,768 + +0.2 37,768 + +0.2 37,768 + +1.7 37,768 + +0.2 37,768 + +1.0 37,768 + +0.2 37,769 - +0.6 37,769 - +0.2 37,769 - +2.5 37,769 - +0.9 37,837 + +1.1 37,838 - -0.8 37,840 + -0.8 37,840 + +1.4 37,840 + +3.2 37,840 + +0.2 37,841 - +1.5 37,841 - -0.8 37,841 - -0.8 37,851 - +1.2 37,870 + -0.8 37,871 - +0.2 37,897 + +0.4 37,898 - +0.6 37,898 - +0.8 37,898 - -0.8 38,005 + +3.0 38,006 - +0.4 38,006 - +2.0 38,008 + +0.9 38,008 + +1.3 38,008 + -0.8 38,008 + +2.6 38,009 - +1.0 38,009 - +1.0 38,034 + +0.6 38,035 - +0.2 38,035 - +0.2 38,035 - +0.3 38,036 + +0.9 38,036 + +0.2 38,036 + +0.8 38,037 - -1.4 38,037 - -0.7 38,037 - +0.2 38,037 - -0.8 38,054 + +1.6 38,054 + +1.5 38,054 + +0.7 38,054 + -0.8 38,054 + +1.2 38,054 + +1.5 38,055 - +2.1 38,058 + +1.1 38,058 + +1.2 38,058 + -0.4 38,059 - -1.4 38,059 - +0.2 38,163 + +1.6 38,163 + +0.2 38,178 + +0.2 38,231 + +1.5 38,251 + +0.4 38,251 + +1.1 38,252 - +1.3 38,252 - +0.2 38,721 + Rru_B0038 0.71 +1.9 38,879 - +1.1 38,879 - +1.4 38,879 - +1.7 38,879 - +0.2 38,885 - +0.2 38,909 - +1.0 38,937 + +1.2 38,937 + +0.8 38,937 + +1.3 38,938 - +0.2 38,938 - +0.2 38,938 - +0.8 38,986 + +3.1 39,122 + +3.3 39,153 + +1.6 39,153 + +0.2 39,154 - +1.1 39,168 + +3.0 39,169 - +0.2 39,329 + Rru_B0039 0.18 -0.8 39,329 + Rru_B0039 0.18 +1.8 39,329 + Rru_B0039 0.18 +1.7 39,330 - Rru_B0039 0.18 +2.2 39,330 - Rru_B0039 0.18 +1.9 39,330 - Rru_B0039 0.18 +1.6 39,372 + Rru_B0039 0.21 +2.1 39,372 + Rru_B0039 0.21 +1.4 39,372 + Rru_B0039 0.21 +0.3 39,373 - Rru_B0039 0.21 +1.6 39,373 - Rru_B0039 0.21 +1.7 39,375 - Rru_B0039 0.21 +1.6 39,375 - Rru_B0039 0.21 +0.2 39,375 - Rru_B0039 0.21 +1.6 39,615 + Rru_B0039 0.34 +1.3 39,615 + Rru_B0039 0.34 +1.4 39,615 + Rru_B0039 0.34 +1.2 39,615 + Rru_B0039 0.34 +0.2 39,615 + Rru_B0039 0.34 -0.8 39,615 + Rru_B0039 0.34 +0.2 39,615 + Rru_B0039 0.34 +1.0 39,615 + Rru_B0039 0.34 +0.2 39,615 + Rru_B0039 0.34 +1.2 39,615 + Rru_B0039 0.34 +1.3 39,615 + Rru_B0039 0.34 +1.5 39,615 + Rru_B0039 0.34 +0.4 39,615 + Rru_B0039 0.34 +1.5 39,615 + Rru_B0039 0.34 +0.2 39,616 - Rru_B0039 0.35 +0.2 39,616 - Rru_B0039 0.35 +2.3 39,616 - Rru_B0039 0.35 +1.5 39,616 - Rru_B0039 0.35 +0.0 39,616 - Rru_B0039 0.35 +0.7 39,616 - Rru_B0039 0.35 +0.2 39,616 - Rru_B0039 0.35 +1.6 39,813 + Rru_B0039 0.46 +1.0 39,813 + Rru_B0039 0.46 +1.5 39,813 + Rru_B0039 0.46 +2.2 39,813 + Rru_B0039 0.46 +1.7 39,813 + Rru_B0039 0.46 +0.2 39,814 - Rru_B0039 0.46 +0.2 39,814 - Rru_B0039 0.46 +0.2 39,814 - Rru_B0039 0.46 +2.0 39,814 - Rru_B0039 0.46 +1.7
Or see this region's nucleotide sequence