Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0024 and Rru_B0025 are separated by 136 nucleotides Rru_B0025 and Rru_B0026 are separated by 338 nucleotides
Rru_B0024: Rru_B0024 - RepA-related protein (NCBI), at 22,802 to 23,734
_B0024
Rru_B0025: Rru_B0025 - hypothetical protein (NCBI), at 23,871 to 24,122
_B0025
Rru_B0026: Rru_B0026 - SapC (NCBI), at 24,461 to 25,255
_B0026
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 22.884 kb on + strand at 22.885 kb on - strand at 23.043 kb on - strand, within Rru_B0024 at 23.116 kb on + strand, within Rru_B0024 at 23.117 kb on - strand, within Rru_B0024 at 23.117 kb on - strand, within Rru_B0024 at 23.118 kb on + strand, within Rru_B0024 at 23.118 kb on + strand, within Rru_B0024 at 23.119 kb on - strand, within Rru_B0024 at 23.119 kb on - strand, within Rru_B0024 at 23.148 kb on + strand, within Rru_B0024 at 23.149 kb on - strand, within Rru_B0024 at 23.184 kb on + strand, within Rru_B0024 at 23.184 kb on + strand, within Rru_B0024 at 23.184 kb on + strand, within Rru_B0024 at 23.272 kb on + strand, within Rru_B0024 at 23.272 kb on + strand, within Rru_B0024 at 23.273 kb on - strand, within Rru_B0024 at 23.321 kb on + strand, within Rru_B0024 at 23.321 kb on + strand, within Rru_B0024 at 23.321 kb on + strand, within Rru_B0024 at 23.321 kb on + strand, within Rru_B0024 at 23.321 kb on + strand, within Rru_B0024 at 23.321 kb on + strand, within Rru_B0024 at 23.322 kb on - strand, within Rru_B0024 at 23.356 kb on + strand, within Rru_B0024 at 23.357 kb on - strand, within Rru_B0024 at 23.425 kb on + strand, within Rru_B0024 at 23.426 kb on - strand, within Rru_B0024 at 23.432 kb on + strand, within Rru_B0024 at 23.454 kb on + strand, within Rru_B0024 at 23.454 kb on + strand, within Rru_B0024 at 23.454 kb on + strand, within Rru_B0024 at 23.454 kb on + strand, within Rru_B0024 at 23.454 kb on + strand, within Rru_B0024 at 23.455 kb on - strand, within Rru_B0024 at 23.455 kb on - strand, within Rru_B0024 at 23.455 kb on - strand, within Rru_B0024 at 23.455 kb on - strand, within Rru_B0024 at 23.455 kb on - strand, within Rru_B0024 at 23.455 kb on - strand, within Rru_B0024 at 23.455 kb on - strand, within Rru_B0024 at 23.474 kb on - strand, within Rru_B0024 at 23.502 kb on + strand, within Rru_B0024 at 23.503 kb on - strand, within Rru_B0024 at 23.503 kb on - strand, within Rru_B0024 at 23.689 kb on + strand at 23.801 kb on + strand at 23.801 kb on + strand at 23.801 kb on + strand at 23.824 kb on + strand at 23.825 kb on - strand at 23.828 kb on + strand at 23.828 kb on + strand at 23.828 kb on + strand at 23.829 kb on - strand at 23.829 kb on - strand at 23.872 kb on + strand at 23.872 kb on + strand at 23.873 kb on - strand at 23.873 kb on - strand at 23.886 kb on + strand at 23.972 kb on + strand, within Rru_B0025 at 23.973 kb on - strand, within Rru_B0025 at 23.974 kb on + strand, within Rru_B0025 at 23.974 kb on + strand, within Rru_B0025 at 23.974 kb on + strand, within Rru_B0025 at 23.975 kb on - strand, within Rru_B0025 at 24.022 kb on - strand, within Rru_B0025 at 24.022 kb on - strand, within Rru_B0025 at 24.022 kb on - strand, within Rru_B0025 at 24.022 kb on - strand, within Rru_B0025 at 24.095 kb on + strand, within Rru_B0025 at 24.209 kb on - strand at 24.249 kb on + strand at 24.251 kb on + strand at 24.251 kb on + strand at 24.252 kb on - strand at 24.252 kb on - strand at 24.252 kb on - strand at 24.331 kb on + strand at 24.331 kb on + strand at 24.331 kb on + strand at 24.331 kb on + strand at 24.332 kb on - strand at 24.332 kb on - strand at 24.332 kb on - strand at 24.332 kb on - strand at 24.332 kb on - strand at 24.332 kb on - strand at 24.333 kb on + strand at 24.333 kb on + strand at 24.333 kb on + strand at 24.333 kb on + strand at 24.333 kb on + strand at 24.334 kb on - strand at 24.334 kb on - strand at 24.334 kb on - strand at 24.334 kb on - strand at 24.334 kb on - strand at 24.334 kb on - strand at 24.334 kb on - strand at 24.375 kb on + strand at 24.375 kb on + strand at 24.375 kb on + strand at 24.375 kb on + strand at 24.376 kb on - strand at 24.422 kb on + strand at 24.422 kb on + strand at 24.423 kb on - strand at 24.423 kb on - strand at 24.452 kb on + strand at 24.452 kb on + strand at 24.452 kb on + strand at 24.452 kb on + strand at 24.452 kb on + strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.453 kb on - strand at 24.530 kb on + strand at 24.531 kb on - strand at 24.589 kb on + strand, within Rru_B0026 at 24.669 kb on + strand, within Rru_B0026 at 24.670 kb on - strand, within Rru_B0026 at 24.722 kb on + strand, within Rru_B0026 at 24.723 kb on - strand, within Rru_B0026 at 24.723 kb on - strand, within Rru_B0026 at 24.723 kb on - strand, within Rru_B0026 at 24.724 kb on + strand, within Rru_B0026 at 24.724 kb on + strand, within Rru_B0026 at 24.724 kb on + strand, within Rru_B0026 at 24.724 kb on + strand, within Rru_B0026 at 24.724 kb on + strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.725 kb on - strand, within Rru_B0026 at 24.746 kb on + strand, within Rru_B0026 at 24.746 kb on + strand, within Rru_B0026 at 24.917 kb on - strand, within Rru_B0026 at 24.917 kb on - strand, within Rru_B0026 at 24.917 kb on - strand, within Rru_B0026 at 25.050 kb on + strand, within Rru_B0026
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 22,884 + +0.8 22,885 - +2.3 23,043 - Rru_B0024 0.26 -0.2 23,116 + Rru_B0024 0.34 -0.1 23,117 - Rru_B0024 0.34 +1.1 23,117 - Rru_B0024 0.34 +1.2 23,118 + Rru_B0024 0.34 +1.7 23,118 + Rru_B0024 0.34 +0.2 23,119 - Rru_B0024 0.34 +1.3 23,119 - Rru_B0024 0.34 +0.2 23,148 + Rru_B0024 0.37 +1.3 23,149 - Rru_B0024 0.37 +0.6 23,184 + Rru_B0024 0.41 +0.9 23,184 + Rru_B0024 0.41 +1.5 23,184 + Rru_B0024 0.41 -0.8 23,272 + Rru_B0024 0.50 +1.5 23,272 + Rru_B0024 0.50 +1.4 23,273 - Rru_B0024 0.50 +2.2 23,321 + Rru_B0024 0.56 -0.8 23,321 + Rru_B0024 0.56 +0.2 23,321 + Rru_B0024 0.56 +1.5 23,321 + Rru_B0024 0.56 +0.7 23,321 + Rru_B0024 0.56 +0.2 23,321 + Rru_B0024 0.56 +1.1 23,322 - Rru_B0024 0.56 +1.4 23,356 + Rru_B0024 0.59 +0.2 23,357 - Rru_B0024 0.59 +0.2 23,425 + Rru_B0024 0.67 +1.1 23,426 - Rru_B0024 0.67 +0.2 23,432 + Rru_B0024 0.68 +0.2 23,454 + Rru_B0024 0.70 +0.7 23,454 + Rru_B0024 0.70 +0.6 23,454 + Rru_B0024 0.70 +0.2 23,454 + Rru_B0024 0.70 +0.4 23,454 + Rru_B0024 0.70 +0.2 23,455 - Rru_B0024 0.70 +1.2 23,455 - Rru_B0024 0.70 +1.0 23,455 - Rru_B0024 0.70 +1.6 23,455 - Rru_B0024 0.70 +0.7 23,455 - Rru_B0024 0.70 -0.8 23,455 - Rru_B0024 0.70 +1.0 23,455 - Rru_B0024 0.70 +0.6 23,474 - Rru_B0024 0.72 -0.8 23,502 + Rru_B0024 0.75 +0.8 23,503 - Rru_B0024 0.75 +0.2 23,503 - Rru_B0024 0.75 +0.2 23,689 + +0.2 23,801 + +0.8 23,801 + +0.5 23,801 + +0.2 23,824 + +0.6 23,825 - +0.2 23,828 + +1.1 23,828 + +0.2 23,828 + +0.2 23,829 - +2.6 23,829 - -0.6 23,872 + +0.7 23,872 + +0.2 23,873 - +0.2 23,873 - +0.2 23,886 + +1.2 23,972 + Rru_B0025 0.40 -0.4 23,973 - Rru_B0025 0.40 -0.8 23,974 + Rru_B0025 0.41 +1.8 23,974 + Rru_B0025 0.41 +0.7 23,974 + Rru_B0025 0.41 +2.2 23,975 - Rru_B0025 0.41 +0.2 24,022 - Rru_B0025 0.60 +1.2 24,022 - Rru_B0025 0.60 -0.8 24,022 - Rru_B0025 0.60 +2.0 24,022 - Rru_B0025 0.60 +0.7 24,095 + Rru_B0025 0.89 -0.8 24,209 - +2.3 24,249 + +0.2 24,251 + +1.2 24,251 + +0.2 24,252 - +0.2 24,252 - +0.2 24,252 - +0.2 24,331 + +0.2 24,331 + +1.3 24,331 + -1.8 24,331 + +0.2 24,332 - +0.6 24,332 - +1.1 24,332 - -0.0 24,332 - +2.2 24,332 - +0.6 24,332 - +0.8 24,333 + +0.2 24,333 + +0.2 24,333 + -0.1 24,333 + +0.2 24,333 + +0.2 24,334 - +0.2 24,334 - -0.8 24,334 - +1.1 24,334 - +1.4 24,334 - +0.2 24,334 - +1.2 24,334 - +1.1 24,375 + -1.8 24,375 + +0.7 24,375 + +2.5 24,375 + +1.0 24,376 - +0.7 24,422 + -0.8 24,422 + +0.2 24,423 - +0.2 24,423 - +1.1 24,452 + +0.2 24,452 + +1.0 24,452 + +2.0 24,452 + +0.2 24,452 + +1.4 24,453 - -1.8 24,453 - +1.1 24,453 - +0.2 24,453 - +0.9 24,453 - +1.1 24,453 - -0.8 24,453 - +1.6 24,453 - +1.0 24,453 - +0.8 24,453 - +0.2 24,453 - +0.2 24,530 + +0.7 24,531 - +1.3 24,589 + Rru_B0026 0.16 +1.2 24,669 + Rru_B0026 0.26 +3.7 24,670 - Rru_B0026 0.26 +0.2 24,722 + Rru_B0026 0.33 +0.2 24,723 - Rru_B0026 0.33 +0.0 24,723 - Rru_B0026 0.33 -0.4 24,723 - Rru_B0026 0.33 +1.1 24,724 + Rru_B0026 0.33 +0.9 24,724 + Rru_B0026 0.33 +1.1 24,724 + Rru_B0026 0.33 +0.2 24,724 + Rru_B0026 0.33 +1.6 24,724 + Rru_B0026 0.33 +1.0 24,725 - Rru_B0026 0.33 +1.6 24,725 - Rru_B0026 0.33 -0.6 24,725 - Rru_B0026 0.33 +0.2 24,725 - Rru_B0026 0.33 +0.7 24,725 - Rru_B0026 0.33 +0.7 24,725 - Rru_B0026 0.33 +0.7 24,725 - Rru_B0026 0.33 +0.5 24,725 - Rru_B0026 0.33 +0.6 24,725 - Rru_B0026 0.33 +1.7 24,746 + Rru_B0026 0.36 -1.4 24,746 + Rru_B0026 0.36 +0.1 24,917 - Rru_B0026 0.57 +2.5 24,917 - Rru_B0026 0.57 +0.2 24,917 - Rru_B0026 0.57 +0.7 25,050 + Rru_B0026 0.74 +0.2
Or see this region's nucleotide sequence