Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4222

Experiment: L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_4220 and Ga0059261_4221 are separated by 36 nucleotidesGa0059261_4221 and Ga0059261_4222 overlap by 4 nucleotidesGa0059261_4222 and Ga0059261_4223 are separated by 85 nucleotides Ga0059261_4220: Ga0059261_4220 - Uncharacterized protein conserved in bacteria, at 4,373,991 to 4,374,653 _4220 Ga0059261_4221: Ga0059261_4221 - Transcriptional regulators, at 4,374,690 to 4,375,172 _4221 Ga0059261_4222: Ga0059261_4222 - Enoyl-CoA hydratase/carnithine racemase, at 4,375,169 to 4,375,933 _4222 Ga0059261_4223: Ga0059261_4223 - 3-isopropylmalate dehydratase, large subunit, at 4,376,019 to 4,377,455 _4223 Position (kb) 4375 4376Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 4374.169 kb on - strand, within Ga0059261_4220at 4374.169 kb on - strand, within Ga0059261_4220at 4374.169 kb on - strand, within Ga0059261_4220at 4374.169 kb on - strand, within Ga0059261_4220at 4374.169 kb on - strandat 4374.169 kb on - strand, within Ga0059261_4220at 4374.169 kb on - strand, within Ga0059261_4220at 4374.169 kb on - strand, within Ga0059261_4220at 4374.170 kb on + strand, within Ga0059261_4220at 4374.170 kb on + strand, within Ga0059261_4220at 4374.170 kb on + strand, within Ga0059261_4220at 4374.170 kb on + strand, within Ga0059261_4220at 4374.170 kb on + strand, within Ga0059261_4220at 4374.170 kb on + strand, within Ga0059261_4220at 4374.170 kb on + strandat 4374.170 kb on + strandat 4374.170 kb on + strand, within Ga0059261_4220at 4374.170 kb on + strand, within Ga0059261_4220at 4374.170 kb on + strand, within Ga0059261_4220at 4374.170 kb on + strand, within Ga0059261_4220at 4374.170 kb on + strand, within Ga0059261_4220at 4374.170 kb on + strand, within Ga0059261_4220at 4374.171 kb on - strand, within Ga0059261_4220at 4374.171 kb on - strand, within Ga0059261_4220at 4374.171 kb on - strand, within Ga0059261_4220at 4374.171 kb on - strand, within Ga0059261_4220at 4374.171 kb on - strand, within Ga0059261_4220at 4374.171 kb on - strand, within Ga0059261_4220at 4374.171 kb on - strand, within Ga0059261_4220at 4374.171 kb on - strand, within Ga0059261_4220at 4374.171 kb on - strand, within Ga0059261_4220at 4374.171 kb on - strand, within Ga0059261_4220at 4374.171 kb on - strand, within Ga0059261_4220at 4374.171 kb on - strand, within Ga0059261_4220at 4374.171 kb on - strand, within Ga0059261_4220at 4374.171 kb on - strand, within Ga0059261_4220at 4374.239 kb on + strand, within Ga0059261_4220at 4374.290 kb on + strand, within Ga0059261_4220at 4374.290 kb on + strand, within Ga0059261_4220at 4374.290 kb on + strand, within Ga0059261_4220at 4374.291 kb on - strand, within Ga0059261_4220at 4374.291 kb on - strand, within Ga0059261_4220at 4374.474 kb on + strand, within Ga0059261_4220at 4374.474 kb on + strand, within Ga0059261_4220at 4374.670 kb on - strandat 4374.687 kb on + strandat 4374.689 kb on + strandat 4374.698 kb on + strandat 4374.723 kb on - strandat 4375.262 kb on + strand, within Ga0059261_4222at 4375.262 kb on + strand, within Ga0059261_4222at 4375.262 kb on + strand, within Ga0059261_4222at 4375.262 kb on + strand, within Ga0059261_4222at 4375.262 kb on + strand, within Ga0059261_4222at 4375.263 kb on - strand, within Ga0059261_4222at 4375.263 kb on - strand, within Ga0059261_4222at 4375.263 kb on - strand, within Ga0059261_4222at 4375.263 kb on - strand, within Ga0059261_4222at 4375.263 kb on - strand, within Ga0059261_4222at 4375.285 kb on - strand, within Ga0059261_4222at 4375.479 kb on + strand, within Ga0059261_4222at 4375.489 kb on + strand, within Ga0059261_4222at 4375.514 kb on + strand, within Ga0059261_4222at 4375.514 kb on + strand, within Ga0059261_4222at 4375.514 kb on + strand, within Ga0059261_4222at 4375.515 kb on - strand, within Ga0059261_4222at 4375.515 kb on - strand, within Ga0059261_4222at 4375.515 kb on - strand, within Ga0059261_4222at 4375.515 kb on - strand, within Ga0059261_4222at 4375.515 kb on - strand, within Ga0059261_4222at 4375.857 kb on + strandat 4375.857 kb on + strandat 4375.857 kb on + strandat 4375.858 kb on - strandat 4375.858 kb on - strandat 4375.858 kb on - strandat 4376.004 kb on + strandat 4376.004 kb on + strandat 4376.004 kb on + strandat 4376.005 kb on - strandat 4376.005 kb on - strandat 4376.043 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.106 kb on - strandat 4376.106 kb on - strandat 4376.195 kb on + strand, within Ga0059261_4223at 4376.195 kb on + strand, within Ga0059261_4223at 4376.195 kb on + strandat 4376.195 kb on + strand, within Ga0059261_4223at 4376.196 kb on - strand, within Ga0059261_4223at 4376.196 kb on - strand, within Ga0059261_4223at 4376.196 kb on - strand, within Ga0059261_4223at 4376.196 kb on - strand, within Ga0059261_4223at 4376.196 kb on - strand, within Ga0059261_4223at 4376.196 kb on - strand, within Ga0059261_4223at 4376.216 kb on + strand, within Ga0059261_4223at 4376.216 kb on + strand, within Ga0059261_4223at 4376.217 kb on - strand, within Ga0059261_4223at 4376.217 kb on - strand, within Ga0059261_4223at 4376.334 kb on + strand, within Ga0059261_4223at 4376.334 kb on + strand, within Ga0059261_4223at 4376.335 kb on - strand, within Ga0059261_4223at 4376.521 kb on + strand, within Ga0059261_4223at 4376.522 kb on - strand, within Ga0059261_4223at 4376.522 kb on - strand, within Ga0059261_4223at 4376.522 kb on - strand, within Ga0059261_4223at 4376.522 kb on - strand, within Ga0059261_4223at 4376.522 kb on - strand, within Ga0059261_4223at 4376.640 kb on + strand, within Ga0059261_4223at 4376.641 kb on - strandat 4376.641 kb on - strand, within Ga0059261_4223at 4376.652 kb on + strand, within Ga0059261_4223at 4376.652 kb on + strand, within Ga0059261_4223at 4376.652 kb on + strand, within Ga0059261_4223at 4376.652 kb on + strand, within Ga0059261_4223at 4376.652 kb on + strand, within Ga0059261_4223at 4376.653 kb on - strand, within Ga0059261_4223at 4376.653 kb on - strand, within Ga0059261_4223at 4376.655 kb on - strand, within Ga0059261_4223at 4376.770 kb on - strand, within Ga0059261_4223at 4376.862 kb on + strand, within Ga0059261_4223at 4376.862 kb on + strand, within Ga0059261_4223at 4376.862 kb on + strand, within Ga0059261_4223at 4376.863 kb on - strand, within Ga0059261_4223at 4376.863 kb on - strand, within Ga0059261_4223

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins
remove
4,374,169 - Ga0059261_4220 0.27 +0.6
4,374,169 - Ga0059261_4220 0.27 +0.4
4,374,169 - Ga0059261_4220 0.27 +0.7
4,374,169 - Ga0059261_4220 0.27 +0.2
4,374,169 - -1.7
4,374,169 - Ga0059261_4220 0.27 +0.0
4,374,169 - Ga0059261_4220 0.27 +0.0
4,374,169 - Ga0059261_4220 0.27 +0.1
4,374,170 + Ga0059261_4220 0.27 +0.6
4,374,170 + Ga0059261_4220 0.27 +1.4
4,374,170 + Ga0059261_4220 0.27 -0.3
4,374,170 + Ga0059261_4220 0.27 +0.7
4,374,170 + Ga0059261_4220 0.27 +0.3
4,374,170 + Ga0059261_4220 0.27 +0.3
4,374,170 + +0.3
4,374,170 + -0.1
4,374,170 + Ga0059261_4220 0.27 +0.4
4,374,170 + Ga0059261_4220 0.27 -0.6
4,374,170 + Ga0059261_4220 0.27 -0.3
4,374,170 + Ga0059261_4220 0.27 -0.1
4,374,170 + Ga0059261_4220 0.27 +0.0
4,374,170 + Ga0059261_4220 0.27 -0.3
4,374,171 - Ga0059261_4220 0.27 +0.5
4,374,171 - Ga0059261_4220 0.27 +0.4
4,374,171 - Ga0059261_4220 0.27 +0.1
4,374,171 - Ga0059261_4220 0.27 +0.0
4,374,171 - Ga0059261_4220 0.27 -0.1
4,374,171 - Ga0059261_4220 0.27 +0.5
4,374,171 - Ga0059261_4220 0.27 +0.1
4,374,171 - Ga0059261_4220 0.27 +0.4
4,374,171 - Ga0059261_4220 0.27 +0.2
4,374,171 - Ga0059261_4220 0.27 +1.1
4,374,171 - Ga0059261_4220 0.27 +0.5
4,374,171 - Ga0059261_4220 0.27 +0.4
4,374,171 - Ga0059261_4220 0.27 +0.5
4,374,171 - Ga0059261_4220 0.27 -0.5
4,374,239 + Ga0059261_4220 0.37 +0.1
4,374,290 + Ga0059261_4220 0.45 +0.1
4,374,290 + Ga0059261_4220 0.45 +1.7
4,374,290 + Ga0059261_4220 0.45 +0.4
4,374,291 - Ga0059261_4220 0.45 +0.4
4,374,291 - Ga0059261_4220 0.45 +0.3
4,374,474 + Ga0059261_4220 0.73 +0.2
4,374,474 + Ga0059261_4220 0.73 -1.6
4,374,670 - +0.9
4,374,687 + +0.0
4,374,689 + -0.1
4,374,698 + -0.0
4,374,723 - +0.0
4,375,262 + Ga0059261_4222 0.12 +0.0
4,375,262 + Ga0059261_4222 0.12 +0.5
4,375,262 + Ga0059261_4222 0.12 -0.5
4,375,262 + Ga0059261_4222 0.12 +0.3
4,375,262 + Ga0059261_4222 0.12 +0.4
4,375,263 - Ga0059261_4222 0.12 +0.3
4,375,263 - Ga0059261_4222 0.12 -0.3
4,375,263 - Ga0059261_4222 0.12 +0.7
4,375,263 - Ga0059261_4222 0.12 +0.1
4,375,263 - Ga0059261_4222 0.12 +0.5
4,375,285 - Ga0059261_4222 0.15 +0.4
4,375,479 + Ga0059261_4222 0.41 +0.5
4,375,489 + Ga0059261_4222 0.42 +0.7
4,375,514 + Ga0059261_4222 0.45 +0.1
4,375,514 + Ga0059261_4222 0.45 +0.3
4,375,514 + Ga0059261_4222 0.45 -0.2
4,375,515 - Ga0059261_4222 0.45 -0.1
4,375,515 - Ga0059261_4222 0.45 +0.8
4,375,515 - Ga0059261_4222 0.45 +0.1
4,375,515 - Ga0059261_4222 0.45 +1.1
4,375,515 - Ga0059261_4222 0.45 -0.2
4,375,857 + +0.1
4,375,857 + -0.1
4,375,857 + +0.8
4,375,858 - -1.7
4,375,858 - +0.2
4,375,858 - +0.6
4,376,004 + -0.0
4,376,004 + -1.6
4,376,004 + -4.5
4,376,005 - -5.2
4,376,005 - -4.9
4,376,043 + -3.8
4,376,103 + -4.8
4,376,103 + -3.0
4,376,103 + -4.1
4,376,103 + -3.3
4,376,103 + -5.6
4,376,103 + -5.2
4,376,103 + -6.0
4,376,103 + -3.6
4,376,103 + -3.7
4,376,103 + -5.1
4,376,104 - -4.4
4,376,104 - -5.2
4,376,104 - -5.0
4,376,104 - -4.0
4,376,104 - -3.5
4,376,104 - -4.2
4,376,104 - -0.3
4,376,104 - -4.3
4,376,104 - -5.3
4,376,104 - -6.0
4,376,104 - -4.1
4,376,104 - -5.8
4,376,104 - -4.9
4,376,106 - -2.6
4,376,106 - -4.9
4,376,195 + Ga0059261_4223 0.12 -4.7
4,376,195 + Ga0059261_4223 0.12 -3.8
4,376,195 + -2.3
4,376,195 + Ga0059261_4223 0.12 -4.1
4,376,196 - Ga0059261_4223 0.12 -5.8
4,376,196 - Ga0059261_4223 0.12 -4.7
4,376,196 - Ga0059261_4223 0.12 -3.5
4,376,196 - Ga0059261_4223 0.12 -5.5
4,376,196 - Ga0059261_4223 0.12 -3.6
4,376,196 - Ga0059261_4223 0.12 -5.1
4,376,216 + Ga0059261_4223 0.14 -4.0
4,376,216 + Ga0059261_4223 0.14 -2.2
4,376,217 - Ga0059261_4223 0.14 -3.9
4,376,217 - Ga0059261_4223 0.14 -3.1
4,376,334 + Ga0059261_4223 0.22 -4.5
4,376,334 + Ga0059261_4223 0.22 -4.0
4,376,335 - Ga0059261_4223 0.22 -3.5
4,376,521 + Ga0059261_4223 0.35 -4.3
4,376,522 - Ga0059261_4223 0.35 -4.9
4,376,522 - Ga0059261_4223 0.35 -4.3
4,376,522 - Ga0059261_4223 0.35 -2.6
4,376,522 - Ga0059261_4223 0.35 -6.8
4,376,522 - Ga0059261_4223 0.35 -4.2
4,376,640 + Ga0059261_4223 0.43 -5.1
4,376,641 - -2.5
4,376,641 - Ga0059261_4223 0.43 -4.4
4,376,652 + Ga0059261_4223 0.44 -2.6
4,376,652 + Ga0059261_4223 0.44 -6.0
4,376,652 + Ga0059261_4223 0.44 -4.0
4,376,652 + Ga0059261_4223 0.44 -3.9
4,376,652 + Ga0059261_4223 0.44 -4.7
4,376,653 - Ga0059261_4223 0.44 -3.9
4,376,653 - Ga0059261_4223 0.44 -5.5
4,376,655 - Ga0059261_4223 0.44 -4.2
4,376,770 - Ga0059261_4223 0.52 -3.9
4,376,862 + Ga0059261_4223 0.59 -5.0
4,376,862 + Ga0059261_4223 0.59 -5.6
4,376,862 + Ga0059261_4223 0.59 -4.1
4,376,863 - Ga0059261_4223 0.59 -6.1
4,376,863 - Ga0059261_4223 0.59 -5.8

Or see this region's nucleotide sequence