Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3383

Experiment: L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3381 and Ga0059261_3382 overlap by 4 nucleotidesGa0059261_3382 and Ga0059261_3383 are separated by 97 nucleotidesGa0059261_3383 and Ga0059261_3384 are separated by 86 nucleotides Ga0059261_3381: Ga0059261_3381 - Arabinose efflux permease, at 3,511,660 to 3,512,778 _3381 Ga0059261_3382: Ga0059261_3382 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 3,512,775 to 3,513,512 _3382 Ga0059261_3383: Ga0059261_3383 - transcriptional regulator, TetR family, at 3,513,610 to 3,514,236 _3383 Ga0059261_3384: Ga0059261_3384 - glutamine synthetase, type I, at 3,514,323 to 3,515,735 _3384 Position (kb) 3513 3514 3515Strain fitness (log2 ratio) -1 0 1at 3512.845 kb on + strandat 3512.846 kb on - strandat 3513.052 kb on + strand, within Ga0059261_3382at 3513.052 kb on + strand, within Ga0059261_3382at 3513.052 kb on + strand, within Ga0059261_3382at 3513.053 kb on - strand, within Ga0059261_3382at 3513.053 kb on - strand, within Ga0059261_3382at 3513.053 kb on - strandat 3513.128 kb on + strand, within Ga0059261_3382at 3513.128 kb on + strand, within Ga0059261_3382at 3513.129 kb on - strand, within Ga0059261_3382at 3513.129 kb on - strand, within Ga0059261_3382at 3513.129 kb on - strand, within Ga0059261_3382at 3513.129 kb on - strand, within Ga0059261_3382at 3513.129 kb on - strand, within Ga0059261_3382at 3513.406 kb on + strand, within Ga0059261_3382at 3513.406 kb on + strand, within Ga0059261_3382at 3513.406 kb on + strand, within Ga0059261_3382at 3513.406 kb on + strand, within Ga0059261_3382at 3513.407 kb on - strand, within Ga0059261_3382at 3513.407 kb on - strand, within Ga0059261_3382at 3513.407 kb on - strand, within Ga0059261_3382at 3513.581 kb on - strandat 3513.621 kb on + strandat 3513.621 kb on + strandat 3513.621 kb on + strandat 3513.621 kb on + strandat 3513.622 kb on - strandat 3513.622 kb on - strandat 3513.622 kb on - strandat 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.706 kb on + strand, within Ga0059261_3383at 3513.707 kb on - strand, within Ga0059261_3383at 3513.707 kb on - strand, within Ga0059261_3383at 3513.707 kb on - strand, within Ga0059261_3383at 3513.707 kb on - strand, within Ga0059261_3383at 3513.767 kb on - strand, within Ga0059261_3383at 3513.817 kb on + strand, within Ga0059261_3383at 3513.818 kb on - strand, within Ga0059261_3383at 3513.818 kb on - strand, within Ga0059261_3383at 3513.818 kb on - strand, within Ga0059261_3383at 3513.830 kb on - strand, within Ga0059261_3383at 3513.862 kb on - strand, within Ga0059261_3383at 3513.917 kb on - strand, within Ga0059261_3383at 3513.917 kb on - strand, within Ga0059261_3383at 3513.917 kb on - strand, within Ga0059261_3383at 3513.917 kb on - strand, within Ga0059261_3383at 3514.237 kb on + strandat 3514.237 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins
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3,512,845 + +0.2
3,512,846 - -0.0
3,513,052 + Ga0059261_3382 0.38 -0.5
3,513,052 + Ga0059261_3382 0.38 +0.2
3,513,052 + Ga0059261_3382 0.38 -0.5
3,513,053 - Ga0059261_3382 0.38 +1.1
3,513,053 - Ga0059261_3382 0.38 +0.4
3,513,053 - +0.3
3,513,128 + Ga0059261_3382 0.48 -0.3
3,513,128 + Ga0059261_3382 0.48 +0.1
3,513,129 - Ga0059261_3382 0.48 +0.2
3,513,129 - Ga0059261_3382 0.48 +0.8
3,513,129 - Ga0059261_3382 0.48 -0.4
3,513,129 - Ga0059261_3382 0.48 +0.3
3,513,129 - Ga0059261_3382 0.48 +0.2
3,513,406 + Ga0059261_3382 0.86 -0.3
3,513,406 + Ga0059261_3382 0.86 -0.4
3,513,406 + Ga0059261_3382 0.86 -0.7
3,513,406 + Ga0059261_3382 0.86 +0.2
3,513,407 - Ga0059261_3382 0.86 -0.2
3,513,407 - Ga0059261_3382 0.86 -0.7
3,513,407 - Ga0059261_3382 0.86 -0.3
3,513,581 - +0.1
3,513,621 + -0.4
3,513,621 + +0.8
3,513,621 + -0.3
3,513,621 + +0.6
3,513,622 - -0.1
3,513,622 - -0.1
3,513,622 - -0.2
3,513,706 + Ga0059261_3383 0.15 +0.1
3,513,706 + Ga0059261_3383 0.15 -0.8
3,513,706 + Ga0059261_3383 0.15 -0.8
3,513,706 + Ga0059261_3383 0.15 +0.3
3,513,706 + Ga0059261_3383 0.15 -0.5
3,513,706 + Ga0059261_3383 0.15 +0.1
3,513,706 + Ga0059261_3383 0.15 -0.2
3,513,706 + Ga0059261_3383 0.15 -1.5
3,513,706 + Ga0059261_3383 0.15 -1.0
3,513,706 + Ga0059261_3383 0.15 -0.0
3,513,706 + Ga0059261_3383 0.15 -0.3
3,513,706 + Ga0059261_3383 0.15 +0.6
3,513,707 - Ga0059261_3383 0.15 -1.3
3,513,707 - Ga0059261_3383 0.15 -0.5
3,513,707 - Ga0059261_3383 0.15 -0.2
3,513,707 - Ga0059261_3383 0.15 -0.4
3,513,767 - Ga0059261_3383 0.25 -0.4
3,513,817 + Ga0059261_3383 0.33 +0.4
3,513,818 - Ga0059261_3383 0.33 +0.4
3,513,818 - Ga0059261_3383 0.33 -0.8
3,513,818 - Ga0059261_3383 0.33 -0.8
3,513,830 - Ga0059261_3383 0.35 +0.4
3,513,862 - Ga0059261_3383 0.40 -0.1
3,513,917 - Ga0059261_3383 0.49 -0.7
3,513,917 - Ga0059261_3383 0.49 -0.6
3,513,917 - Ga0059261_3383 0.49 +1.3
3,513,917 - Ga0059261_3383 0.49 -0.8
3,514,237 + +0.3
3,514,237 + -0.1

Or see this region's nucleotide sequence