Experiment: L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2190 and Ga0059261_2191 are separated by 10 nucleotides Ga0059261_2191 and Ga0059261_2192 are separated by 49 nucleotides Ga0059261_2192 and Ga0059261_2193 are separated by 7 nucleotides Ga0059261_2193 and Ga0059261_2194 are separated by 10 nucleotides
Ga0059261_2190: Ga0059261_2190 - PTS IIA-like nitrogen-regulatory protein PtsN, at 2,298,811 to 2,299,281
_2190
Ga0059261_2191: Ga0059261_2191 - ribosomal subunit interface protein, at 2,299,292 to 2,299,870
_2191
Ga0059261_2192: Ga0059261_2192 - DNA polymerase III, epsilon subunit, Proteobacterial, at 2,299,920 to 2,300,612
_2192
Ga0059261_2193: Ga0059261_2193 - dephospho-CoA kinase, at 2,300,620 to 2,301,213
_2193
Ga0059261_2194: Ga0059261_2194 - shikimate dehydrogenase (EC 1.1.1.25) (from data) , at 2,301,224 to 2,302,036
_2194
Position (kb)
2299
2300
2301 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2299.172 kb on + strand, within Ga0059261_2190 at 2299.172 kb on + strand, within Ga0059261_2190 at 2299.172 kb on + strand, within Ga0059261_2190 at 2299.172 kb on + strand, within Ga0059261_2190 at 2299.173 kb on - strand, within Ga0059261_2190 at 2299.173 kb on - strand, within Ga0059261_2190 at 2299.173 kb on - strand, within Ga0059261_2190 at 2299.344 kb on + strand at 2299.344 kb on + strand at 2299.344 kb on + strand at 2299.344 kb on + strand at 2299.356 kb on + strand, within Ga0059261_2191 at 2299.356 kb on + strand, within Ga0059261_2191 at 2299.356 kb on + strand, within Ga0059261_2191 at 2299.356 kb on + strand, within Ga0059261_2191 at 2299.356 kb on + strand, within Ga0059261_2191 at 2299.356 kb on + strand, within Ga0059261_2191 at 2299.356 kb on + strand, within Ga0059261_2191 at 2299.356 kb on + strand, within Ga0059261_2191 at 2299.357 kb on - strand, within Ga0059261_2191 at 2299.357 kb on - strand, within Ga0059261_2191 at 2299.357 kb on - strand, within Ga0059261_2191 at 2299.357 kb on - strand, within Ga0059261_2191 at 2299.357 kb on - strand, within Ga0059261_2191 at 2299.357 kb on - strand, within Ga0059261_2191 at 2299.357 kb on - strand, within Ga0059261_2191 at 2299.524 kb on + strand, within Ga0059261_2191 at 2299.536 kb on + strand, within Ga0059261_2191 at 2299.536 kb on + strand, within Ga0059261_2191 at 2299.536 kb on + strand, within Ga0059261_2191 at 2299.537 kb on - strand, within Ga0059261_2191 at 2299.596 kb on + strand, within Ga0059261_2191 at 2299.596 kb on + strand, within Ga0059261_2191 at 2299.597 kb on - strand, within Ga0059261_2191 at 2299.597 kb on - strand, within Ga0059261_2191 at 2299.725 kb on + strand, within Ga0059261_2191 at 2299.725 kb on + strand, within Ga0059261_2191 at 2299.725 kb on + strand, within Ga0059261_2191 at 2299.725 kb on + strand, within Ga0059261_2191 at 2299.725 kb on + strand, within Ga0059261_2191 at 2299.779 kb on + strand, within Ga0059261_2191 at 2299.779 kb on + strand, within Ga0059261_2191 at 2299.779 kb on + strand, within Ga0059261_2191 at 2299.780 kb on - strand, within Ga0059261_2191 at 2299.870 kb on + strand at 2299.870 kb on + strand at 2299.870 kb on + strand at 2299.870 kb on + strand at 2299.870 kb on + strand at 2299.870 kb on + strand at 2299.871 kb on - strand at 2299.871 kb on - strand at 2299.871 kb on - strand at 2299.886 kb on + strand at 2299.886 kb on + strand at 2299.886 kb on + strand at 2299.886 kb on + strand at 2299.886 kb on + strand at 2299.887 kb on - strand at 2299.887 kb on - strand at 2299.899 kb on + strand at 2299.899 kb on + strand at 2299.899 kb on + strand at 2299.899 kb on + strand at 2299.900 kb on - strand at 2299.900 kb on - strand at 2299.900 kb on - strand at 2301.394 kb on - strand, within Ga0059261_2194 at 2301.394 kb on - strand, within Ga0059261_2194 at 2301.394 kb on - strand, within Ga0059261_2194 at 2301.394 kb on - strand, within Ga0059261_2194 at 2301.394 kb on - strand, within Ga0059261_2194 at 2301.406 kb on - strand, within Ga0059261_2194 at 2301.406 kb on - strand, within Ga0059261_2194 at 2301.406 kb on - strand, within Ga0059261_2194 at 2301.406 kb on - strand, within Ga0059261_2194
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins remove 2,299,172 + Ga0059261_2190 0.77 -2.5 2,299,172 + Ga0059261_2190 0.77 -1.2 2,299,172 + Ga0059261_2190 0.77 -4.4 2,299,172 + Ga0059261_2190 0.77 -2.1 2,299,173 - Ga0059261_2190 0.77 -5.3 2,299,173 - Ga0059261_2190 0.77 -4.4 2,299,173 - Ga0059261_2190 0.77 -4.8 2,299,344 + -2.6 2,299,344 + -3.4 2,299,344 + -2.7 2,299,344 + -3.7 2,299,356 + Ga0059261_2191 0.11 -3.1 2,299,356 + Ga0059261_2191 0.11 -2.5 2,299,356 + Ga0059261_2191 0.11 -2.9 2,299,356 + Ga0059261_2191 0.11 -3.5 2,299,356 + Ga0059261_2191 0.11 -2.5 2,299,356 + Ga0059261_2191 0.11 -4.4 2,299,356 + Ga0059261_2191 0.11 -2.7 2,299,356 + Ga0059261_2191 0.11 -4.1 2,299,357 - Ga0059261_2191 0.11 -0.9 2,299,357 - Ga0059261_2191 0.11 -3.4 2,299,357 - Ga0059261_2191 0.11 -2.1 2,299,357 - Ga0059261_2191 0.11 -1.8 2,299,357 - Ga0059261_2191 0.11 -2.4 2,299,357 - Ga0059261_2191 0.11 -3.3 2,299,357 - Ga0059261_2191 0.11 -4.0 2,299,524 + Ga0059261_2191 0.40 -3.4 2,299,536 + Ga0059261_2191 0.42 -2.0 2,299,536 + Ga0059261_2191 0.42 -1.5 2,299,536 + Ga0059261_2191 0.42 -2.2 2,299,537 - Ga0059261_2191 0.42 -1.9 2,299,596 + Ga0059261_2191 0.53 -2.6 2,299,596 + Ga0059261_2191 0.53 -1.8 2,299,597 - Ga0059261_2191 0.53 -3.0 2,299,597 - Ga0059261_2191 0.53 -2.1 2,299,725 + Ga0059261_2191 0.75 -3.1 2,299,725 + Ga0059261_2191 0.75 -2.7 2,299,725 + Ga0059261_2191 0.75 -2.8 2,299,725 + Ga0059261_2191 0.75 -4.7 2,299,725 + Ga0059261_2191 0.75 -3.4 2,299,779 + Ga0059261_2191 0.84 -1.5 2,299,779 + Ga0059261_2191 0.84 -2.6 2,299,779 + Ga0059261_2191 0.84 -3.7 2,299,780 - Ga0059261_2191 0.84 -3.6 2,299,870 + -4.0 2,299,870 + -4.4 2,299,870 + -4.0 2,299,870 + -3.5 2,299,870 + -3.0 2,299,870 + -5.4 2,299,871 - -2.8 2,299,871 - -3.0 2,299,871 - -3.2 2,299,886 + -3.3 2,299,886 + -2.5 2,299,886 + -0.0 2,299,886 + -1.6 2,299,886 + -0.7 2,299,887 - -0.2 2,299,887 - +0.8 2,299,899 + -3.2 2,299,899 + -4.2 2,299,899 + -1.9 2,299,899 + -2.8 2,299,900 - +0.1 2,299,900 - -0.4 2,299,900 - -0.9 2,301,394 - Ga0059261_2194 0.21 -3.3 2,301,394 - Ga0059261_2194 0.21 -3.8 2,301,394 - Ga0059261_2194 0.21 -0.8 2,301,394 - Ga0059261_2194 0.21 -3.9 2,301,394 - Ga0059261_2194 0.21 -3.9 2,301,406 - Ga0059261_2194 0.22 -4.5 2,301,406 - Ga0059261_2194 0.22 -3.7 2,301,406 - Ga0059261_2194 0.22 -2.6 2,301,406 - Ga0059261_2194 0.22 -3.1
Or see this region's nucleotide sequence