Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2052

Experiment: L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2051 and Ga0059261_2052 overlap by 4 nucleotidesGa0059261_2052 and Ga0059261_2053 overlap by 4 nucleotidesGa0059261_2053 and Ga0059261_2054 overlap by 23 nucleotides Ga0059261_2051: Ga0059261_2051 - diaminopimelate decarboxylase (EC 4.1.1.20) (from data), at 2,154,473 to 2,155,732 _2051 Ga0059261_2052: Ga0059261_2052 - siroheme synthase, N-terminal domain, at 2,155,729 to 2,156,484 _2052 Ga0059261_2053: Ga0059261_2053 - Mg2+ and Co2+ transporters, at 2,156,481 to 2,157,431 _2053 Ga0059261_2054: Ga0059261_2054 - Response regulator receiver domain, at 2,157,409 to 2,158,014 _2054 Position (kb) 2155 2156 2157Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2155.115 kb on + strand, within Ga0059261_2051at 2155.115 kb on + strand, within Ga0059261_2051at 2155.116 kb on - strand, within Ga0059261_2051at 2155.116 kb on - strand, within Ga0059261_2051at 2155.116 kb on - strand, within Ga0059261_2051at 2155.205 kb on + strand, within Ga0059261_2051at 2155.205 kb on + strand, within Ga0059261_2051at 2155.205 kb on + strand, within Ga0059261_2051at 2155.205 kb on + strand, within Ga0059261_2051at 2155.205 kb on + strand, within Ga0059261_2051at 2155.205 kb on + strand, within Ga0059261_2051at 2155.205 kb on + strand, within Ga0059261_2051at 2155.206 kb on - strand, within Ga0059261_2051at 2155.206 kb on - strand, within Ga0059261_2051at 2155.206 kb on - strand, within Ga0059261_2051at 2155.206 kb on - strand, within Ga0059261_2051at 2155.206 kb on - strandat 2155.376 kb on + strand, within Ga0059261_2051at 2155.376 kb on + strandat 2155.376 kb on + strand, within Ga0059261_2051at 2155.376 kb on + strand, within Ga0059261_2051at 2155.376 kb on + strand, within Ga0059261_2051at 2155.376 kb on + strand, within Ga0059261_2051at 2155.376 kb on + strand, within Ga0059261_2051at 2155.376 kb on + strand, within Ga0059261_2051at 2155.377 kb on - strand, within Ga0059261_2051at 2155.377 kb on - strand, within Ga0059261_2051at 2155.377 kb on - strand, within Ga0059261_2051at 2155.377 kb on - strand, within Ga0059261_2051at 2155.377 kb on - strand, within Ga0059261_2051at 2155.377 kb on - strand, within Ga0059261_2051at 2155.377 kb on - strand, within Ga0059261_2051at 2155.424 kb on + strand, within Ga0059261_2051at 2155.424 kb on + strand, within Ga0059261_2051at 2155.424 kb on + strand, within Ga0059261_2051at 2155.424 kb on + strand, within Ga0059261_2051at 2155.424 kb on + strand, within Ga0059261_2051at 2155.424 kb on + strand, within Ga0059261_2051at 2155.424 kb on + strand, within Ga0059261_2051at 2155.425 kb on - strand, within Ga0059261_2051at 2155.425 kb on - strand, within Ga0059261_2051at 2155.425 kb on - strand, within Ga0059261_2051at 2155.425 kb on - strand, within Ga0059261_2051at 2155.433 kb on + strand, within Ga0059261_2051at 2155.433 kb on + strand, within Ga0059261_2051at 2155.433 kb on + strand, within Ga0059261_2051at 2155.433 kb on + strand, within Ga0059261_2051at 2155.434 kb on - strand, within Ga0059261_2051at 2155.586 kb on + strand, within Ga0059261_2051at 2155.610 kb on + strandat 2155.610 kb on + strandat 2155.610 kb on + strandat 2155.610 kb on + strandat 2155.610 kb on + strandat 2155.610 kb on + strandat 2155.610 kb on + strandat 2155.610 kb on + strandat 2155.610 kb on + strandat 2155.610 kb on + strandat 2155.610 kb on + strandat 2155.611 kb on - strandat 2155.611 kb on - strandat 2155.611 kb on - strandat 2155.611 kb on - strandat 2155.611 kb on - strandat 2155.611 kb on - strandat 2155.611 kb on - strandat 2155.611 kb on - strandat 2155.611 kb on - strandat 2155.612 kb on + strandat 2155.612 kb on + strandat 2155.612 kb on + strandat 2155.613 kb on - strandat 2155.613 kb on - strandat 2156.081 kb on + strand, within Ga0059261_2052at 2156.082 kb on - strand, within Ga0059261_2052at 2156.082 kb on - strand, within Ga0059261_2052at 2156.370 kb on + strand, within Ga0059261_2052at 2156.370 kb on + strand, within Ga0059261_2052at 2156.370 kb on + strand, within Ga0059261_2052at 2156.370 kb on + strand, within Ga0059261_2052at 2156.370 kb on + strand, within Ga0059261_2052at 2156.370 kb on + strand, within Ga0059261_2052at 2156.370 kb on + strand, within Ga0059261_2052at 2156.370 kb on + strand, within Ga0059261_2052at 2156.370 kb on + strand, within Ga0059261_2052at 2156.443 kb on - strandat 2156.496 kb on + strandat 2156.496 kb on + strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.772 kb on + strand, within Ga0059261_2053at 2156.772 kb on + strand, within Ga0059261_2053at 2156.772 kb on + strand, within Ga0059261_2053at 2156.773 kb on - strand, within Ga0059261_2053at 2156.773 kb on - strand, within Ga0059261_2053at 2156.773 kb on - strand, within Ga0059261_2053at 2156.773 kb on - strand, within Ga0059261_2053at 2156.773 kb on - strand, within Ga0059261_2053at 2157.008 kb on + strand, within Ga0059261_2053at 2157.008 kb on + strand, within Ga0059261_2053at 2157.008 kb on - strand, within Ga0059261_2053at 2157.009 kb on - strand, within Ga0059261_2053at 2157.009 kb on - strand, within Ga0059261_2053at 2157.009 kb on - strand, within Ga0059261_2053at 2157.048 kb on + strand, within Ga0059261_2053at 2157.049 kb on - strand, within Ga0059261_2053at 2157.173 kb on + strand, within Ga0059261_2053at 2157.174 kb on - strand, within Ga0059261_2053at 2157.174 kb on - strand, within Ga0059261_2053at 2157.174 kb on - strand, within Ga0059261_2053at 2157.174 kb on - strand, within Ga0059261_2053at 2157.330 kb on + strand, within Ga0059261_2053at 2157.330 kb on + strand, within Ga0059261_2053at 2157.402 kb on + strandat 2157.402 kb on + strandat 2157.402 kb on + strandat 2157.402 kb on + strandat 2157.402 kb on + strandat 2157.402 kb on + strandat 2157.403 kb on - strandat 2157.403 kb on - strandat 2157.403 kb on - strandat 2157.403 kb on - strandat 2157.403 kb on - strandat 2157.403 kb on - strandat 2157.403 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins
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2,155,115 + Ga0059261_2051 0.51 -5.5
2,155,115 + Ga0059261_2051 0.51 -4.7
2,155,116 - Ga0059261_2051 0.51 -4.0
2,155,116 - Ga0059261_2051 0.51 -4.6
2,155,116 - Ga0059261_2051 0.51 -1.5
2,155,205 + Ga0059261_2051 0.58 -4.3
2,155,205 + Ga0059261_2051 0.58 -3.8
2,155,205 + Ga0059261_2051 0.58 -4.4
2,155,205 + Ga0059261_2051 0.58 -6.8
2,155,205 + Ga0059261_2051 0.58 -5.1
2,155,205 + Ga0059261_2051 0.58 -1.7
2,155,205 + Ga0059261_2051 0.58 -3.9
2,155,206 - Ga0059261_2051 0.58 -4.5
2,155,206 - Ga0059261_2051 0.58 -2.5
2,155,206 - Ga0059261_2051 0.58 -5.2
2,155,206 - Ga0059261_2051 0.58 -4.3
2,155,206 - -1.8
2,155,376 + Ga0059261_2051 0.72 -5.9
2,155,376 + -1.1
2,155,376 + Ga0059261_2051 0.72 -5.3
2,155,376 + Ga0059261_2051 0.72 -3.9
2,155,376 + Ga0059261_2051 0.72 -5.5
2,155,376 + Ga0059261_2051 0.72 -4.5
2,155,376 + Ga0059261_2051 0.72 -5.2
2,155,376 + Ga0059261_2051 0.72 -2.7
2,155,377 - Ga0059261_2051 0.72 -2.4
2,155,377 - Ga0059261_2051 0.72 -4.7
2,155,377 - Ga0059261_2051 0.72 -4.0
2,155,377 - Ga0059261_2051 0.72 -4.2
2,155,377 - Ga0059261_2051 0.72 -2.6
2,155,377 - Ga0059261_2051 0.72 -4.8
2,155,377 - Ga0059261_2051 0.72 -4.4
2,155,424 + Ga0059261_2051 0.75 -6.9
2,155,424 + Ga0059261_2051 0.75 -4.2
2,155,424 + Ga0059261_2051 0.75 -6.3
2,155,424 + Ga0059261_2051 0.75 -4.2
2,155,424 + Ga0059261_2051 0.75 -4.3
2,155,424 + Ga0059261_2051 0.75 -4.9
2,155,424 + Ga0059261_2051 0.75 -2.7
2,155,425 - Ga0059261_2051 0.76 -3.4
2,155,425 - Ga0059261_2051 0.76 -4.1
2,155,425 - Ga0059261_2051 0.76 -3.5
2,155,425 - Ga0059261_2051 0.76 -5.4
2,155,433 + Ga0059261_2051 0.76 -6.0
2,155,433 + Ga0059261_2051 0.76 -6.0
2,155,433 + Ga0059261_2051 0.76 -5.6
2,155,433 + Ga0059261_2051 0.76 -5.1
2,155,434 - Ga0059261_2051 0.76 -4.6
2,155,586 + Ga0059261_2051 0.88 -6.5
2,155,610 + -3.7
2,155,610 + -5.1
2,155,610 + -5.6
2,155,610 + -4.1
2,155,610 + -3.9
2,155,610 + -4.6
2,155,610 + -4.3
2,155,610 + -6.1
2,155,610 + -2.3
2,155,610 + -6.6
2,155,610 + -5.4
2,155,611 - -1.8
2,155,611 - -4.1
2,155,611 - -3.3
2,155,611 - -1.5
2,155,611 - -5.0
2,155,611 - -5.3
2,155,611 - -1.4
2,155,611 - -4.7
2,155,611 - -3.1
2,155,612 + -4.7
2,155,612 + -6.2
2,155,612 + -5.0
2,155,613 - -5.0
2,155,613 - -3.0
2,156,081 + Ga0059261_2052 0.47 -1.3
2,156,082 - Ga0059261_2052 0.47 -1.7
2,156,082 - Ga0059261_2052 0.47 +0.1
2,156,370 + Ga0059261_2052 0.85 +0.3
2,156,370 + Ga0059261_2052 0.85 +0.1
2,156,370 + Ga0059261_2052 0.85 +0.3
2,156,370 + Ga0059261_2052 0.85 +1.6
2,156,370 + Ga0059261_2052 0.85 -0.1
2,156,370 + Ga0059261_2052 0.85 +0.6
2,156,370 + Ga0059261_2052 0.85 +0.3
2,156,370 + Ga0059261_2052 0.85 -0.3
2,156,370 + Ga0059261_2052 0.85 +0.1
2,156,443 - -0.5
2,156,496 + +0.2
2,156,496 + +0.3
2,156,497 - +0.1
2,156,497 - +0.5
2,156,497 - -0.3
2,156,497 - +0.6
2,156,497 - +0.6
2,156,497 - +0.5
2,156,497 - +0.5
2,156,772 + Ga0059261_2053 0.31 +0.8
2,156,772 + Ga0059261_2053 0.31 -0.7
2,156,772 + Ga0059261_2053 0.31 +1.5
2,156,773 - Ga0059261_2053 0.31 +0.7
2,156,773 - Ga0059261_2053 0.31 +0.5
2,156,773 - Ga0059261_2053 0.31 +0.4
2,156,773 - Ga0059261_2053 0.31 +0.1
2,156,773 - Ga0059261_2053 0.31 -0.4
2,157,008 + Ga0059261_2053 0.55 +0.3
2,157,008 + Ga0059261_2053 0.55 -0.8
2,157,008 - Ga0059261_2053 0.55 +0.2
2,157,009 - Ga0059261_2053 0.56 -0.6
2,157,009 - Ga0059261_2053 0.56 +0.5
2,157,009 - Ga0059261_2053 0.56 -0.5
2,157,048 + Ga0059261_2053 0.60 -0.9
2,157,049 - Ga0059261_2053 0.60 +0.1
2,157,173 + Ga0059261_2053 0.73 -0.3
2,157,174 - Ga0059261_2053 0.73 +0.1
2,157,174 - Ga0059261_2053 0.73 +0.8
2,157,174 - Ga0059261_2053 0.73 +0.4
2,157,174 - Ga0059261_2053 0.73 +0.4
2,157,330 + Ga0059261_2053 0.89 +0.5
2,157,330 + Ga0059261_2053 0.89 -0.2
2,157,402 + -0.3
2,157,402 + +0.1
2,157,402 + -0.1
2,157,402 + +0.3
2,157,402 + -0.4
2,157,402 + +0.4
2,157,403 - -0.8
2,157,403 - +0.1
2,157,403 - -0.0
2,157,403 - -0.3
2,157,403 - -0.2
2,157,403 - -0.5
2,157,403 - -0.1

Or see this region's nucleotide sequence