Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2036

Experiment: L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2035 and Ga0059261_2036 are separated by 230 nucleotidesGa0059261_2036 and Ga0059261_2037 are separated by 14 nucleotidesGa0059261_2037 and Ga0059261_2038 are separated by 199 nucleotides Ga0059261_2035: Ga0059261_2035 - Histidinol-phosphatase [alternative form] (EC 3.1.3.15) (from data), at 2,136,967 to 2,137,749 _2035 Ga0059261_2036: Ga0059261_2036 - LSU ribosomal protein L35P, at 2,137,980 to 2,138,183 _2036 Ga0059261_2037: Ga0059261_2037 - LSU ribosomal protein L20P, at 2,138,198 to 2,138,563 _2037 Ga0059261_2038: Ga0059261_2038 - Putative threonine efflux protein, at 2,138,763 to 2,139,386 _2038 Position (kb) 2137 2138 2139Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2136.986 kb on - strandat 2137.301 kb on + strand, within Ga0059261_2035at 2137.302 kb on - strand, within Ga0059261_2035at 2137.395 kb on + strand, within Ga0059261_2035at 2137.395 kb on + strand, within Ga0059261_2035at 2137.395 kb on + strand, within Ga0059261_2035at 2137.395 kb on + strand, within Ga0059261_2035at 2137.396 kb on - strand, within Ga0059261_2035at 2137.396 kb on - strand, within Ga0059261_2035at 2137.396 kb on - strand, within Ga0059261_2035at 2137.396 kb on - strand, within Ga0059261_2035at 2137.396 kb on - strand, within Ga0059261_2035at 2137.522 kb on + strand, within Ga0059261_2035at 2137.522 kb on + strand, within Ga0059261_2035at 2137.523 kb on - strand, within Ga0059261_2035at 2137.523 kb on - strand, within Ga0059261_2035at 2137.523 kb on - strand, within Ga0059261_2035at 2137.524 kb on + strand, within Ga0059261_2035at 2137.524 kb on + strand, within Ga0059261_2035at 2137.524 kb on + strand, within Ga0059261_2035at 2137.524 kb on + strand, within Ga0059261_2035at 2137.524 kb on + strand, within Ga0059261_2035at 2137.525 kb on - strand, within Ga0059261_2035at 2137.525 kb on - strand, within Ga0059261_2035at 2137.525 kb on - strand, within Ga0059261_2035at 2137.525 kb on - strand, within Ga0059261_2035at 2137.525 kb on - strandat 2137.525 kb on - strand, within Ga0059261_2035at 2137.528 kb on + strand, within Ga0059261_2035at 2137.529 kb on - strand, within Ga0059261_2035at 2137.529 kb on - strand, within Ga0059261_2035at 2137.529 kb on - strand, within Ga0059261_2035at 2137.529 kb on - strand, within Ga0059261_2035at 2137.747 kb on + strandat 2137.747 kb on + strandat 2137.747 kb on + strandat 2137.747 kb on + strandat 2137.747 kb on + strandat 2137.747 kb on + strandat 2137.747 kb on + strandat 2137.747 kb on + strandat 2137.748 kb on - strandat 2137.748 kb on - strandat 2137.748 kb on - strandat 2137.748 kb on - strandat 2137.748 kb on - strandat 2137.748 kb on - strandat 2137.814 kb on + strandat 2137.814 kb on + strandat 2137.815 kb on - strandat 2137.815 kb on - strandat 2137.815 kb on - strandat 2137.952 kb on + strandat 2137.952 kb on + strandat 2138.787 kb on + strandat 2138.787 kb on + strandat 2138.787 kb on + strandat 2138.787 kb on + strandat 2138.787 kb on + strandat 2138.787 kb on + strandat 2138.787 kb on + strandat 2138.788 kb on - strandat 2138.788 kb on - strandat 2138.788 kb on - strandat 2138.788 kb on - strandat 2138.788 kb on - strandat 2138.788 kb on - strandat 2138.788 kb on - strandat 2138.788 kb on - strandat 2138.991 kb on + strand, within Ga0059261_2038at 2138.991 kb on + strand, within Ga0059261_2038at 2138.991 kb on + strand, within Ga0059261_2038at 2138.992 kb on - strand, within Ga0059261_2038at 2139.006 kb on + strand, within Ga0059261_2038at 2139.006 kb on + strand, within Ga0059261_2038at 2139.006 kb on + strand, within Ga0059261_2038at 2139.006 kb on + strand, within Ga0059261_2038at 2139.007 kb on - strand, within Ga0059261_2038at 2139.007 kb on - strand, within Ga0059261_2038at 2139.007 kb on - strand, within Ga0059261_2038at 2139.007 kb on - strand, within Ga0059261_2038at 2139.007 kb on - strand, within Ga0059261_2038at 2139.007 kb on - strand, within Ga0059261_2038at 2139.102 kb on + strand, within Ga0059261_2038at 2139.102 kb on + strand, within Ga0059261_2038at 2139.102 kb on + strand, within Ga0059261_2038at 2139.102 kb on + strand, within Ga0059261_2038at 2139.103 kb on - strand, within Ga0059261_2038at 2139.103 kb on - strand, within Ga0059261_2038at 2139.103 kb on - strand, within Ga0059261_2038

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins
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2,136,986 - -5.1
2,137,301 + Ga0059261_2035 0.43 -3.3
2,137,302 - Ga0059261_2035 0.43 -1.9
2,137,395 + Ga0059261_2035 0.55 -4.2
2,137,395 + Ga0059261_2035 0.55 -2.2
2,137,395 + Ga0059261_2035 0.55 -4.8
2,137,395 + Ga0059261_2035 0.55 -6.9
2,137,396 - Ga0059261_2035 0.55 -4.3
2,137,396 - Ga0059261_2035 0.55 -5.5
2,137,396 - Ga0059261_2035 0.55 -3.9
2,137,396 - Ga0059261_2035 0.55 -1.4
2,137,396 - Ga0059261_2035 0.55 -4.5
2,137,522 + Ga0059261_2035 0.71 -4.5
2,137,522 + Ga0059261_2035 0.71 -3.4
2,137,523 - Ga0059261_2035 0.71 -4.6
2,137,523 - Ga0059261_2035 0.71 -5.2
2,137,523 - Ga0059261_2035 0.71 -5.1
2,137,524 + Ga0059261_2035 0.71 -4.1
2,137,524 + Ga0059261_2035 0.71 -3.7
2,137,524 + Ga0059261_2035 0.71 -4.7
2,137,524 + Ga0059261_2035 0.71 -4.5
2,137,524 + Ga0059261_2035 0.71 -4.1
2,137,525 - Ga0059261_2035 0.71 -5.7
2,137,525 - Ga0059261_2035 0.71 -4.5
2,137,525 - Ga0059261_2035 0.71 -3.6
2,137,525 - Ga0059261_2035 0.71 -4.3
2,137,525 - -1.8
2,137,525 - Ga0059261_2035 0.71 -2.2
2,137,528 + Ga0059261_2035 0.72 -3.7
2,137,529 - Ga0059261_2035 0.72 -3.3
2,137,529 - Ga0059261_2035 0.72 -0.6
2,137,529 - Ga0059261_2035 0.72 -2.4
2,137,529 - Ga0059261_2035 0.72 -4.1
2,137,747 + +0.7
2,137,747 + +0.5
2,137,747 + -0.1
2,137,747 + -0.0
2,137,747 + -0.3
2,137,747 + +0.3
2,137,747 + -1.4
2,137,747 + -0.1
2,137,748 - +0.3
2,137,748 - +0.2
2,137,748 - +0.7
2,137,748 - +0.6
2,137,748 - +0.6
2,137,748 - -0.1
2,137,814 + +0.1
2,137,814 + +0.1
2,137,815 - -0.0
2,137,815 - +0.2
2,137,815 - -0.1
2,137,952 + -0.0
2,137,952 + -0.3
2,138,787 + -0.5
2,138,787 + +0.5
2,138,787 + -0.2
2,138,787 + +0.3
2,138,787 + -0.7
2,138,787 + +0.3
2,138,787 + -0.1
2,138,788 - +0.3
2,138,788 - +0.3
2,138,788 - -0.1
2,138,788 - -0.1
2,138,788 - +0.1
2,138,788 - +0.2
2,138,788 - +0.4
2,138,788 - +0.2
2,138,991 + Ga0059261_2038 0.37 +0.8
2,138,991 + Ga0059261_2038 0.37 +0.4
2,138,991 + Ga0059261_2038 0.37 +0.2
2,138,992 - Ga0059261_2038 0.37 -0.0
2,139,006 + Ga0059261_2038 0.39 -0.2
2,139,006 + Ga0059261_2038 0.39 -0.1
2,139,006 + Ga0059261_2038 0.39 +0.2
2,139,006 + Ga0059261_2038 0.39 +0.3
2,139,007 - Ga0059261_2038 0.39 +0.1
2,139,007 - Ga0059261_2038 0.39 +0.6
2,139,007 - Ga0059261_2038 0.39 +0.2
2,139,007 - Ga0059261_2038 0.39 -0.4
2,139,007 - Ga0059261_2038 0.39 +0.5
2,139,007 - Ga0059261_2038 0.39 +0.5
2,139,102 + Ga0059261_2038 0.54 +0.0
2,139,102 + Ga0059261_2038 0.54 -0.1
2,139,102 + Ga0059261_2038 0.54 -1.0
2,139,102 + Ga0059261_2038 0.54 -0.7
2,139,103 - Ga0059261_2038 0.54 +0.2
2,139,103 - Ga0059261_2038 0.54 -0.1
2,139,103 - Ga0059261_2038 0.54 +0.4

Or see this region's nucleotide sequence