Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1389

Experiment: L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1388 and Ga0059261_1389 overlap by 4 nucleotidesGa0059261_1389 and Ga0059261_1390 are separated by 5 nucleotides Ga0059261_1388: Ga0059261_1388 - cystathionine beta-lyase, bacterial, at 1,465,154 to 1,466,389 _1388 Ga0059261_1389: Ga0059261_1389 - Mechanosensitive ion channel, at 1,466,386 to 1,467,711 _1389 Ga0059261_1390: Ga0059261_1390 - Uncharacterized protein conserved in bacteria, at 1,467,717 to 1,468,853 _1390 Position (kb) 1466 1467 1468Strain fitness (log2 ratio) -2 -1 0 1at 1465.457 kb on + strand, within Ga0059261_1388at 1465.541 kb on + strand, within Ga0059261_1388at 1465.541 kb on + strand, within Ga0059261_1388at 1465.541 kb on + strand, within Ga0059261_1388at 1465.541 kb on + strand, within Ga0059261_1388at 1465.541 kb on + strand, within Ga0059261_1388at 1465.541 kb on + strand, within Ga0059261_1388at 1465.541 kb on + strand, within Ga0059261_1388at 1465.541 kb on + strandat 1465.541 kb on + strand, within Ga0059261_1388at 1465.541 kb on + strand, within Ga0059261_1388at 1465.541 kb on + strand, within Ga0059261_1388at 1465.542 kb on - strand, within Ga0059261_1388at 1465.542 kb on - strand, within Ga0059261_1388at 1465.542 kb on - strand, within Ga0059261_1388at 1465.542 kb on - strand, within Ga0059261_1388at 1465.604 kb on + strandat 1465.604 kb on + strand, within Ga0059261_1388at 1465.604 kb on + strand, within Ga0059261_1388at 1465.604 kb on + strand, within Ga0059261_1388at 1465.605 kb on - strand, within Ga0059261_1388at 1465.605 kb on - strand, within Ga0059261_1388at 1465.605 kb on - strand, within Ga0059261_1388at 1465.762 kb on + strand, within Ga0059261_1388at 1465.762 kb on + strand, within Ga0059261_1388at 1465.763 kb on - strand, within Ga0059261_1388at 1465.763 kb on - strand, within Ga0059261_1388at 1465.763 kb on - strand, within Ga0059261_1388at 1465.763 kb on - strand, within Ga0059261_1388at 1465.835 kb on + strand, within Ga0059261_1388at 1465.835 kb on + strand, within Ga0059261_1388at 1465.835 kb on + strand, within Ga0059261_1388at 1465.836 kb on - strand, within Ga0059261_1388at 1465.836 kb on - strand, within Ga0059261_1388at 1465.836 kb on - strand, within Ga0059261_1388at 1466.024 kb on + strand, within Ga0059261_1388at 1466.186 kb on + strandat 1466.189 kb on - strand, within Ga0059261_1388at 1466.214 kb on - strand, within Ga0059261_1388at 1466.238 kb on + strand, within Ga0059261_1388at 1466.238 kb on + strand, within Ga0059261_1388at 1466.239 kb on - strand, within Ga0059261_1388at 1466.239 kb on - strand, within Ga0059261_1388at 1466.239 kb on - strand, within Ga0059261_1388at 1466.239 kb on - strand, within Ga0059261_1388at 1466.239 kb on - strand, within Ga0059261_1388at 1466.277 kb on + strandat 1466.277 kb on + strandat 1466.277 kb on + strandat 1466.277 kb on + strandat 1466.278 kb on - strandat 1466.278 kb on - strandat 1466.278 kb on - strandat 1466.278 kb on - strandat 1466.278 kb on - strandat 1466.649 kb on + strand, within Ga0059261_1389at 1466.932 kb on + strand, within Ga0059261_1389at 1466.932 kb on + strand, within Ga0059261_1389at 1466.932 kb on + strand, within Ga0059261_1389at 1466.933 kb on - strand, within Ga0059261_1389at 1466.933 kb on - strand, within Ga0059261_1389at 1466.959 kb on - strandat 1466.959 kb on - strand, within Ga0059261_1389at 1467.335 kb on + strand, within Ga0059261_1389at 1467.431 kb on + strand, within Ga0059261_1389at 1467.431 kb on + strand, within Ga0059261_1389at 1467.431 kb on + strand, within Ga0059261_1389at 1467.431 kb on + strand, within Ga0059261_1389at 1467.432 kb on - strand, within Ga0059261_1389at 1467.432 kb on - strand, within Ga0059261_1389at 1467.432 kb on - strand, within Ga0059261_1389at 1467.432 kb on - strand, within Ga0059261_1389at 1467.505 kb on + strand, within Ga0059261_1389at 1467.505 kb on + strand, within Ga0059261_1389at 1467.505 kb on + strand, within Ga0059261_1389at 1467.505 kb on + strand, within Ga0059261_1389at 1467.505 kb on + strand, within Ga0059261_1389at 1467.506 kb on - strand, within Ga0059261_1389at 1467.506 kb on - strand, within Ga0059261_1389at 1467.506 kb on - strand, within Ga0059261_1389at 1467.621 kb on + strandat 1467.705 kb on + strandat 1467.705 kb on + strandat 1467.706 kb on - strandat 1467.706 kb on - strandat 1467.706 kb on - strandat 1467.706 kb on - strandat 1467.709 kb on + strandat 1467.709 kb on + strandat 1467.709 kb on + strandat 1467.709 kb on + strandat 1467.709 kb on + strandat 1467.709 kb on + strandat 1467.710 kb on - strandat 1467.731 kb on + strandat 1467.933 kb on + strand, within Ga0059261_1390at 1467.933 kb on + strand, within Ga0059261_1390at 1467.934 kb on - strand, within Ga0059261_1390at 1467.934 kb on - strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.961 kb on - strand, within Ga0059261_1390at 1467.961 kb on - strand, within Ga0059261_1390at 1467.961 kb on - strand, within Ga0059261_1390at 1467.961 kb on - strand, within Ga0059261_1390at 1467.961 kb on - strand, within Ga0059261_1390at 1468.011 kb on + strand, within Ga0059261_1390at 1468.011 kb on + strand, within Ga0059261_1390at 1468.011 kb on + strand, within Ga0059261_1390at 1468.011 kb on + strand, within Ga0059261_1390at 1468.012 kb on - strand, within Ga0059261_1390at 1468.012 kb on - strand, within Ga0059261_1390at 1468.012 kb on - strand, within Ga0059261_1390at 1468.012 kb on - strand, within Ga0059261_1390at 1468.012 kb on - strandat 1468.012 kb on - strand, within Ga0059261_1390at 1468.012 kb on - strand, within Ga0059261_1390at 1468.012 kb on - strand, within Ga0059261_1390at 1468.014 kb on + strand, within Ga0059261_1390at 1468.014 kb on + strand, within Ga0059261_1390at 1468.014 kb on + strand, within Ga0059261_1390at 1468.014 kb on + strand, within Ga0059261_1390at 1468.014 kb on + strand, within Ga0059261_1390at 1468.015 kb on - strand, within Ga0059261_1390at 1468.015 kb on - strand, within Ga0059261_1390at 1468.015 kb on - strand, within Ga0059261_1390at 1468.072 kb on + strand, within Ga0059261_1390at 1468.073 kb on - strand, within Ga0059261_1390at 1468.245 kb on + strand, within Ga0059261_1390at 1468.246 kb on - strandat 1468.246 kb on - strand, within Ga0059261_1390at 1468.398 kb on + strand, within Ga0059261_1390at 1468.398 kb on + strand, within Ga0059261_1390at 1468.398 kb on + strand, within Ga0059261_1390at 1468.398 kb on + strand, within Ga0059261_1390at 1468.398 kb on + strand, within Ga0059261_1390at 1468.399 kb on - strand, within Ga0059261_1390at 1468.399 kb on - strand, within Ga0059261_1390at 1468.399 kb on - strand, within Ga0059261_1390at 1468.434 kb on + strand, within Ga0059261_1390at 1468.435 kb on - strand, within Ga0059261_1390at 1468.435 kb on - strand, within Ga0059261_1390at 1468.435 kb on - strand, within Ga0059261_1390at 1468.435 kb on - strand, within Ga0059261_1390at 1468.489 kb on + strand, within Ga0059261_1390at 1468.489 kb on + strand, within Ga0059261_1390at 1468.489 kb on + strand, within Ga0059261_1390at 1468.489 kb on + strand, within Ga0059261_1390at 1468.489 kb on + strand, within Ga0059261_1390at 1468.490 kb on - strand, within Ga0059261_1390at 1468.560 kb on + strand, within Ga0059261_1390at 1468.560 kb on + strand, within Ga0059261_1390at 1468.560 kb on + strand, within Ga0059261_1390at 1468.560 kb on + strand, within Ga0059261_1390at 1468.560 kb on + strand, within Ga0059261_1390at 1468.561 kb on - strand, within Ga0059261_1390at 1468.561 kb on - strand, within Ga0059261_1390at 1468.561 kb on - strand, within Ga0059261_1390at 1468.561 kb on - strand, within Ga0059261_1390at 1468.569 kb on + strand, within Ga0059261_1390at 1468.580 kb on + strand, within Ga0059261_1390at 1468.581 kb on - strand, within Ga0059261_1390at 1468.617 kb on + strand, within Ga0059261_1390at 1468.617 kb on + strand, within Ga0059261_1390at 1468.617 kb on + strand, within Ga0059261_1390at 1468.617 kb on + strand, within Ga0059261_1390at 1468.618 kb on - strand, within Ga0059261_1390at 1468.618 kb on - strand, within Ga0059261_1390at 1468.618 kb on - strand, within Ga0059261_1390at 1468.618 kb on - strand, within Ga0059261_1390at 1468.620 kb on + strand, within Ga0059261_1390at 1468.620 kb on + strand, within Ga0059261_1390at 1468.621 kb on - strand, within Ga0059261_1390at 1468.621 kb on - strand, within Ga0059261_1390at 1468.621 kb on - strandat 1468.705 kb on - strand, within Ga0059261_1390

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins
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1,465,457 + Ga0059261_1388 0.25 -0.3
1,465,541 + Ga0059261_1388 0.31 +0.4
1,465,541 + Ga0059261_1388 0.31 +0.1
1,465,541 + Ga0059261_1388 0.31 -0.4
1,465,541 + Ga0059261_1388 0.31 -0.5
1,465,541 + Ga0059261_1388 0.31 +0.4
1,465,541 + Ga0059261_1388 0.31 -0.4
1,465,541 + Ga0059261_1388 0.31 +0.6
1,465,541 + -0.8
1,465,541 + Ga0059261_1388 0.31 -0.6
1,465,541 + Ga0059261_1388 0.31 +0.1
1,465,541 + Ga0059261_1388 0.31 -0.4
1,465,542 - Ga0059261_1388 0.31 +0.8
1,465,542 - Ga0059261_1388 0.31 +0.3
1,465,542 - Ga0059261_1388 0.31 +0.6
1,465,542 - Ga0059261_1388 0.31 +0.0
1,465,604 + -0.4
1,465,604 + Ga0059261_1388 0.36 +0.1
1,465,604 + Ga0059261_1388 0.36 +0.5
1,465,604 + Ga0059261_1388 0.36 -0.0
1,465,605 - Ga0059261_1388 0.36 +0.2
1,465,605 - Ga0059261_1388 0.36 -0.4
1,465,605 - Ga0059261_1388 0.36 +0.4
1,465,762 + Ga0059261_1388 0.49 +0.6
1,465,762 + Ga0059261_1388 0.49 +0.3
1,465,763 - Ga0059261_1388 0.49 +0.3
1,465,763 - Ga0059261_1388 0.49 +0.3
1,465,763 - Ga0059261_1388 0.49 +0.1
1,465,763 - Ga0059261_1388 0.49 +0.5
1,465,835 + Ga0059261_1388 0.55 -0.5
1,465,835 + Ga0059261_1388 0.55 -0.2
1,465,835 + Ga0059261_1388 0.55 +0.6
1,465,836 - Ga0059261_1388 0.55 +0.3
1,465,836 - Ga0059261_1388 0.55 +0.4
1,465,836 - Ga0059261_1388 0.55 -0.8
1,466,024 + Ga0059261_1388 0.70 -0.3
1,466,186 + +0.5
1,466,189 - Ga0059261_1388 0.84 +0.8
1,466,214 - Ga0059261_1388 0.86 +0.3
1,466,238 + Ga0059261_1388 0.88 -0.2
1,466,238 + Ga0059261_1388 0.88 -0.8
1,466,239 - Ga0059261_1388 0.88 +0.1
1,466,239 - Ga0059261_1388 0.88 +0.4
1,466,239 - Ga0059261_1388 0.88 +0.1
1,466,239 - Ga0059261_1388 0.88 +0.7
1,466,239 - Ga0059261_1388 0.88 -0.6
1,466,277 + +0.3
1,466,277 + +0.0
1,466,277 + -0.6
1,466,277 + -0.0
1,466,278 - +0.7
1,466,278 - +0.3
1,466,278 - +0.1
1,466,278 - -0.2
1,466,278 - +0.1
1,466,649 + Ga0059261_1389 0.20 +0.5
1,466,932 + Ga0059261_1389 0.41 -0.3
1,466,932 + Ga0059261_1389 0.41 +0.1
1,466,932 + Ga0059261_1389 0.41 +0.3
1,466,933 - Ga0059261_1389 0.41 -0.3
1,466,933 - Ga0059261_1389 0.41 +0.8
1,466,959 - +1.0
1,466,959 - Ga0059261_1389 0.43 -0.6
1,467,335 + Ga0059261_1389 0.72 -0.1
1,467,431 + Ga0059261_1389 0.79 -0.7
1,467,431 + Ga0059261_1389 0.79 +0.2
1,467,431 + Ga0059261_1389 0.79 -0.3
1,467,431 + Ga0059261_1389 0.79 -0.3
1,467,432 - Ga0059261_1389 0.79 -0.3
1,467,432 - Ga0059261_1389 0.79 -0.1
1,467,432 - Ga0059261_1389 0.79 +0.4
1,467,432 - Ga0059261_1389 0.79 +0.6
1,467,505 + Ga0059261_1389 0.84 +0.9
1,467,505 + Ga0059261_1389 0.84 -0.3
1,467,505 + Ga0059261_1389 0.84 -0.7
1,467,505 + Ga0059261_1389 0.84 -0.9
1,467,505 + Ga0059261_1389 0.84 +0.1
1,467,506 - Ga0059261_1389 0.84 +0.2
1,467,506 - Ga0059261_1389 0.84 +0.4
1,467,506 - Ga0059261_1389 0.84 -0.3
1,467,621 + +0.1
1,467,705 + +0.9
1,467,705 + -0.6
1,467,706 - +0.0
1,467,706 - -1.0
1,467,706 - +1.0
1,467,706 - +0.2
1,467,709 + +1.1
1,467,709 + +1.3
1,467,709 + +0.8
1,467,709 + +0.6
1,467,709 + -0.0
1,467,709 + -0.4
1,467,710 - -0.1
1,467,731 + +0.2
1,467,933 + Ga0059261_1390 0.19 -0.5
1,467,933 + Ga0059261_1390 0.19 +0.2
1,467,934 - Ga0059261_1390 0.19 +0.3
1,467,934 - Ga0059261_1390 0.19 +0.5
1,467,960 + Ga0059261_1390 0.21 -0.4
1,467,960 + Ga0059261_1390 0.21 -0.8
1,467,960 + Ga0059261_1390 0.21 +0.2
1,467,960 + Ga0059261_1390 0.21 +0.1
1,467,960 + Ga0059261_1390 0.21 +0.2
1,467,960 + Ga0059261_1390 0.21 +1.0
1,467,960 + Ga0059261_1390 0.21 +0.4
1,467,960 + Ga0059261_1390 0.21 +0.5
1,467,960 + Ga0059261_1390 0.21 -0.3
1,467,961 - Ga0059261_1390 0.21 +0.1
1,467,961 - Ga0059261_1390 0.21 -0.2
1,467,961 - Ga0059261_1390 0.21 -0.8
1,467,961 - Ga0059261_1390 0.21 +0.2
1,467,961 - Ga0059261_1390 0.21 -0.3
1,468,011 + Ga0059261_1390 0.26 -0.0
1,468,011 + Ga0059261_1390 0.26 -0.2
1,468,011 + Ga0059261_1390 0.26 -0.1
1,468,011 + Ga0059261_1390 0.26 +0.4
1,468,012 - Ga0059261_1390 0.26 +0.4
1,468,012 - Ga0059261_1390 0.26 +0.2
1,468,012 - Ga0059261_1390 0.26 -0.3
1,468,012 - Ga0059261_1390 0.26 -0.1
1,468,012 - +0.7
1,468,012 - Ga0059261_1390 0.26 +0.4
1,468,012 - Ga0059261_1390 0.26 -0.1
1,468,012 - Ga0059261_1390 0.26 +0.1
1,468,014 + Ga0059261_1390 0.26 -0.7
1,468,014 + Ga0059261_1390 0.26 +0.4
1,468,014 + Ga0059261_1390 0.26 +0.1
1,468,014 + Ga0059261_1390 0.26 -0.0
1,468,014 + Ga0059261_1390 0.26 -0.1
1,468,015 - Ga0059261_1390 0.26 -0.3
1,468,015 - Ga0059261_1390 0.26 +0.1
1,468,015 - Ga0059261_1390 0.26 -0.6
1,468,072 + Ga0059261_1390 0.31 -0.4
1,468,073 - Ga0059261_1390 0.31 +0.2
1,468,245 + Ga0059261_1390 0.46 +1.3
1,468,246 - +0.1
1,468,246 - Ga0059261_1390 0.47 -0.4
1,468,398 + Ga0059261_1390 0.60 -0.5
1,468,398 + Ga0059261_1390 0.60 +0.2
1,468,398 + Ga0059261_1390 0.60 +0.6
1,468,398 + Ga0059261_1390 0.60 +0.4
1,468,398 + Ga0059261_1390 0.60 +1.1
1,468,399 - Ga0059261_1390 0.60 -0.3
1,468,399 - Ga0059261_1390 0.60 +0.1
1,468,399 - Ga0059261_1390 0.60 -0.6
1,468,434 + Ga0059261_1390 0.63 +0.4
1,468,435 - Ga0059261_1390 0.63 +0.1
1,468,435 - Ga0059261_1390 0.63 -0.1
1,468,435 - Ga0059261_1390 0.63 -0.2
1,468,435 - Ga0059261_1390 0.63 -0.5
1,468,489 + Ga0059261_1390 0.68 +0.4
1,468,489 + Ga0059261_1390 0.68 +0.6
1,468,489 + Ga0059261_1390 0.68 +0.4
1,468,489 + Ga0059261_1390 0.68 -2.4
1,468,489 + Ga0059261_1390 0.68 +1.2
1,468,490 - Ga0059261_1390 0.68 +0.3
1,468,560 + Ga0059261_1390 0.74 +0.8
1,468,560 + Ga0059261_1390 0.74 +0.7
1,468,560 + Ga0059261_1390 0.74 -1.4
1,468,560 + Ga0059261_1390 0.74 -0.0
1,468,560 + Ga0059261_1390 0.74 -0.1
1,468,561 - Ga0059261_1390 0.74 +0.8
1,468,561 - Ga0059261_1390 0.74 +0.4
1,468,561 - Ga0059261_1390 0.74 +0.3
1,468,561 - Ga0059261_1390 0.74 -0.1
1,468,569 + Ga0059261_1390 0.75 +0.8
1,468,580 + Ga0059261_1390 0.76 -0.1
1,468,581 - Ga0059261_1390 0.76 -0.2
1,468,617 + Ga0059261_1390 0.79 +0.0
1,468,617 + Ga0059261_1390 0.79 +0.3
1,468,617 + Ga0059261_1390 0.79 -0.1
1,468,617 + Ga0059261_1390 0.79 +0.5
1,468,618 - Ga0059261_1390 0.79 -1.0
1,468,618 - Ga0059261_1390 0.79 +0.6
1,468,618 - Ga0059261_1390 0.79 -0.6
1,468,618 - Ga0059261_1390 0.79 +0.0
1,468,620 + Ga0059261_1390 0.79 -0.7
1,468,620 + Ga0059261_1390 0.79 -0.8
1,468,621 - Ga0059261_1390 0.80 +0.2
1,468,621 - Ga0059261_1390 0.80 +0.4
1,468,621 - -0.6
1,468,705 - Ga0059261_1390 0.87 +1.2

Or see this region's nucleotide sequence