Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0014

Experiment: L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0012 and Ga0059261_0013 are separated by 21 nucleotidesGa0059261_0013 and Ga0059261_0014 are separated by 144 nucleotidesGa0059261_0014 and Ga0059261_0015 are separated by 45 nucleotidesGa0059261_0015 and Ga0059261_0016 are separated by 117 nucleotides Ga0059261_0012: Ga0059261_0012 - Protein of unknown function (DUF1469), at 10,357 to 10,710 _0012 Ga0059261_0013: Ga0059261_0013 - hypothetical protein, at 10,732 to 11,217 _0013 Ga0059261_0014: Ga0059261_0014 - phosphopyruvate hydratase, at 11,362 to 12,639 _0014 Ga0059261_0015: Ga0059261_0015 - Septum formation initiator, at 12,685 to 12,996 _0015 Ga0059261_0016: Ga0059261_0016 - pyruvate dehydrogenase E1 component, alpha subunit, at 13,114 to 14,163 _0016 Position (kb) 11 12 13Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 10.478 kb on + strand, within Ga0059261_0012at 10.478 kb on + strand, within Ga0059261_0012at 10.478 kb on + strand, within Ga0059261_0012at 10.478 kb on + strand, within Ga0059261_0012at 10.478 kb on + strand, within Ga0059261_0012at 10.479 kb on - strand, within Ga0059261_0012at 10.479 kb on - strand, within Ga0059261_0012at 10.479 kb on - strand, within Ga0059261_0012at 10.479 kb on - strand, within Ga0059261_0012at 10.610 kb on + strand, within Ga0059261_0012at 10.610 kb on + strand, within Ga0059261_0012at 10.610 kb on + strand, within Ga0059261_0012at 10.611 kb on - strand, within Ga0059261_0012at 10.631 kb on + strand, within Ga0059261_0012at 10.631 kb on + strand, within Ga0059261_0012at 10.632 kb on - strand, within Ga0059261_0012at 10.632 kb on - strand, within Ga0059261_0012at 10.632 kb on - strand, within Ga0059261_0012at 10.632 kb on - strandat 10.632 kb on - strand, within Ga0059261_0012at 10.632 kb on - strand, within Ga0059261_0012at 10.982 kb on + strand, within Ga0059261_0013at 10.982 kb on + strand, within Ga0059261_0013at 10.982 kb on + strand, within Ga0059261_0013at 10.983 kb on - strand, within Ga0059261_0013at 11.076 kb on + strand, within Ga0059261_0013at 11.237 kb on + strandat 11.237 kb on + strandat 11.238 kb on - strandat 11.283 kb on + strandat 11.283 kb on + strandat 11.283 kb on + strandat 11.284 kb on - strandat 11.284 kb on - strandat 11.284 kb on - strandat 11.314 kb on + strandat 11.314 kb on + strandat 11.314 kb on + strandat 11.347 kb on + strandat 11.347 kb on + strandat 11.536 kb on + strand, within Ga0059261_0014at 11.537 kb on - strand, within Ga0059261_0014at 11.537 kb on - strand, within Ga0059261_0014at 11.537 kb on - strand, within Ga0059261_0014at 11.752 kb on + strand, within Ga0059261_0014at 11.752 kb on + strand, within Ga0059261_0014at 11.753 kb on - strand, within Ga0059261_0014at 11.753 kb on - strand, within Ga0059261_0014at 11.755 kb on - strand, within Ga0059261_0014at 11.758 kb on + strand, within Ga0059261_0014at 11.758 kb on + strand, within Ga0059261_0014at 11.758 kb on + strand, within Ga0059261_0014at 11.759 kb on - strand, within Ga0059261_0014at 11.922 kb on + strand, within Ga0059261_0014at 11.922 kb on + strand, within Ga0059261_0014at 11.922 kb on + strand, within Ga0059261_0014at 11.922 kb on + strand, within Ga0059261_0014at 11.922 kb on + strand, within Ga0059261_0014at 11.922 kb on + strand, within Ga0059261_0014at 11.923 kb on - strand, within Ga0059261_0014at 12.103 kb on + strand, within Ga0059261_0014at 12.103 kb on + strand, within Ga0059261_0014at 12.104 kb on - strand, within Ga0059261_0014at 12.104 kb on - strand, within Ga0059261_0014at 12.121 kb on + strand, within Ga0059261_0014at 12.122 kb on - strand, within Ga0059261_0014at 12.196 kb on + strand, within Ga0059261_0014at 12.436 kb on + strand, within Ga0059261_0014at 12.436 kb on + strand, within Ga0059261_0014at 12.562 kb on + strandat 12.562 kb on + strandat 12.563 kb on - strandat 12.563 kb on - strandat 12.563 kb on - strandat 12.563 kb on - strandat 12.563 kb on - strandat 12.610 kb on + strandat 12.610 kb on + strandat 12.610 kb on + strandat 12.610 kb on + strandat 12.611 kb on - strandat 12.611 kb on - strandat 12.611 kb on - strandat 12.611 kb on - strandat 13.010 kb on + strandat 13.010 kb on + strandat 13.010 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins
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10,478 + Ga0059261_0012 0.34 +0.2
10,478 + Ga0059261_0012 0.34 -0.3
10,478 + Ga0059261_0012 0.34 +0.9
10,478 + Ga0059261_0012 0.34 -0.4
10,478 + Ga0059261_0012 0.34 -0.8
10,479 - Ga0059261_0012 0.34 -0.4
10,479 - Ga0059261_0012 0.34 +0.4
10,479 - Ga0059261_0012 0.34 -0.4
10,479 - Ga0059261_0012 0.34 -0.3
10,610 + Ga0059261_0012 0.71 -0.1
10,610 + Ga0059261_0012 0.71 +0.1
10,610 + Ga0059261_0012 0.71 +0.3
10,611 - Ga0059261_0012 0.72 +0.9
10,631 + Ga0059261_0012 0.77 +0.7
10,631 + Ga0059261_0012 0.77 +0.2
10,632 - Ga0059261_0012 0.78 +0.0
10,632 - Ga0059261_0012 0.78 +0.5
10,632 - Ga0059261_0012 0.78 +0.5
10,632 - -0.2
10,632 - Ga0059261_0012 0.78 +0.7
10,632 - Ga0059261_0012 0.78 +0.6
10,982 + Ga0059261_0013 0.51 +1.3
10,982 + Ga0059261_0013 0.51 -0.1
10,982 + Ga0059261_0013 0.51 -0.3
10,983 - Ga0059261_0013 0.52 -0.1
11,076 + Ga0059261_0013 0.71 +0.5
11,237 + +0.5
11,237 + -2.5
11,238 - -0.8
11,283 + -0.2
11,283 + -0.1
11,283 + -1.0
11,284 - +0.2
11,284 - -0.5
11,284 - -0.1
11,314 + +0.1
11,314 + +0.2
11,314 + -0.1
11,347 + +0.6
11,347 + -0.2
11,536 + Ga0059261_0014 0.14 -2.3
11,537 - Ga0059261_0014 0.14 -4.2
11,537 - Ga0059261_0014 0.14 -4.7
11,537 - Ga0059261_0014 0.14 -4.7
11,752 + Ga0059261_0014 0.31 -3.5
11,752 + Ga0059261_0014 0.31 -3.1
11,753 - Ga0059261_0014 0.31 -3.9
11,753 - Ga0059261_0014 0.31 -4.5
11,755 - Ga0059261_0014 0.31 -5.1
11,758 + Ga0059261_0014 0.31 -5.5
11,758 + Ga0059261_0014 0.31 -5.9
11,758 + Ga0059261_0014 0.31 -2.2
11,759 - Ga0059261_0014 0.31 -4.0
11,922 + Ga0059261_0014 0.44 -4.2
11,922 + Ga0059261_0014 0.44 -2.9
11,922 + Ga0059261_0014 0.44 -5.7
11,922 + Ga0059261_0014 0.44 -2.0
11,922 + Ga0059261_0014 0.44 -2.4
11,922 + Ga0059261_0014 0.44 -3.9
11,923 - Ga0059261_0014 0.44 -4.1
12,103 + Ga0059261_0014 0.58 -4.5
12,103 + Ga0059261_0014 0.58 -3.6
12,104 - Ga0059261_0014 0.58 -4.7
12,104 - Ga0059261_0014 0.58 -4.2
12,121 + Ga0059261_0014 0.59 -3.3
12,122 - Ga0059261_0014 0.59 -5.0
12,196 + Ga0059261_0014 0.65 -5.5
12,436 + Ga0059261_0014 0.84 -2.1
12,436 + Ga0059261_0014 0.84 -2.8
12,562 + -1.4
12,562 + -5.0
12,563 - -3.6
12,563 - -4.1
12,563 - -3.4
12,563 - -3.8
12,563 - -3.4
12,610 + -2.7
12,610 + -6.1
12,610 + -5.9
12,610 + -5.4
12,611 - -4.8
12,611 - -3.2
12,611 - -3.9
12,611 - -4.0
13,010 + +1.1
13,010 + +0.1
13,010 + -0.0

Or see this region's nucleotide sequence