Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26840

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26830 and BWI76_RS26835 are separated by 11 nucleotidesBWI76_RS26835 and BWI76_RS26840 are separated by 2 nucleotidesBWI76_RS26840 and BWI76_RS26845 overlap by 4 nucleotides BWI76_RS26830: BWI76_RS26830 - endoglucanase, at 5,561,376 to 5,562,380 _RS26830 BWI76_RS26835: BWI76_RS26835 - hypothetical protein, at 5,562,392 to 5,562,865 _RS26835 BWI76_RS26840: BWI76_RS26840 - cellulose synthase, at 5,562,868 to 5,566,920 _RS26840 BWI76_RS26845: BWI76_RS26845 - cellulose synthase regulator BcsB, at 5,566,917 to 5,569,319 _RS26845 Position (kb) 5562 5563 5564 5565 5566 5567Strain fitness (log2 ratio) -2 -1 0 1 2at 5561.868 kb on - strand, within BWI76_RS26830at 5561.876 kb on - strand, within BWI76_RS26830at 5562.152 kb on + strand, within BWI76_RS26830at 5562.160 kb on - strand, within BWI76_RS26830at 5562.324 kb on - strandat 5562.454 kb on - strand, within BWI76_RS26835at 5562.471 kb on + strand, within BWI76_RS26835at 5562.478 kb on - strand, within BWI76_RS26835at 5562.484 kb on - strand, within BWI76_RS26835at 5562.523 kb on + strand, within BWI76_RS26835at 5562.604 kb on + strand, within BWI76_RS26835at 5562.612 kb on - strand, within BWI76_RS26835at 5562.612 kb on - strand, within BWI76_RS26835at 5562.622 kb on - strand, within BWI76_RS26835at 5562.657 kb on + strand, within BWI76_RS26835at 5562.665 kb on - strand, within BWI76_RS26835at 5562.969 kb on - strandat 5562.975 kb on - strandat 5563.055 kb on + strandat 5563.057 kb on + strandat 5563.119 kb on + strandat 5563.123 kb on - strandat 5563.142 kb on - strandat 5563.219 kb on + strandat 5563.355 kb on - strand, within BWI76_RS26840at 5563.497 kb on - strand, within BWI76_RS26840at 5563.520 kb on + strand, within BWI76_RS26840at 5563.520 kb on + strand, within BWI76_RS26840at 5563.528 kb on - strandat 5563.788 kb on + strand, within BWI76_RS26840at 5563.870 kb on + strand, within BWI76_RS26840at 5563.934 kb on - strand, within BWI76_RS26840at 5563.975 kb on - strand, within BWI76_RS26840at 5564.113 kb on + strand, within BWI76_RS26840at 5564.231 kb on + strand, within BWI76_RS26840at 5564.239 kb on - strand, within BWI76_RS26840at 5564.247 kb on + strand, within BWI76_RS26840at 5564.264 kb on + strand, within BWI76_RS26840at 5564.367 kb on - strand, within BWI76_RS26840at 5564.446 kb on - strand, within BWI76_RS26840at 5564.464 kb on + strand, within BWI76_RS26840at 5564.503 kb on + strand, within BWI76_RS26840at 5564.512 kb on - strand, within BWI76_RS26840at 5564.629 kb on - strand, within BWI76_RS26840at 5564.700 kb on - strand, within BWI76_RS26840at 5564.710 kb on - strand, within BWI76_RS26840at 5564.763 kb on - strand, within BWI76_RS26840at 5564.784 kb on + strand, within BWI76_RS26840at 5564.937 kb on - strand, within BWI76_RS26840at 5564.944 kb on + strand, within BWI76_RS26840at 5564.996 kb on - strand, within BWI76_RS26840at 5565.046 kb on + strand, within BWI76_RS26840at 5565.054 kb on - strand, within BWI76_RS26840at 5565.134 kb on - strand, within BWI76_RS26840at 5565.180 kb on - strand, within BWI76_RS26840at 5565.180 kb on - strand, within BWI76_RS26840at 5565.243 kb on - strand, within BWI76_RS26840at 5565.499 kb on + strand, within BWI76_RS26840at 5565.586 kb on - strand, within BWI76_RS26840at 5565.617 kb on + strand, within BWI76_RS26840at 5565.710 kb on + strand, within BWI76_RS26840at 5565.819 kb on + strand, within BWI76_RS26840at 5565.968 kb on + strand, within BWI76_RS26840at 5565.973 kb on + strand, within BWI76_RS26840at 5565.981 kb on - strand, within BWI76_RS26840at 5566.046 kb on - strand, within BWI76_RS26840at 5566.080 kb on + strand, within BWI76_RS26840at 5566.085 kb on + strand, within BWI76_RS26840at 5566.085 kb on + strand, within BWI76_RS26840at 5566.160 kb on - strand, within BWI76_RS26840at 5566.198 kb on - strand, within BWI76_RS26840at 5566.208 kb on + strand, within BWI76_RS26840at 5566.321 kb on + strand, within BWI76_RS26840at 5566.321 kb on + strand, within BWI76_RS26840at 5566.429 kb on + strand, within BWI76_RS26840at 5566.503 kb on + strand, within BWI76_RS26840at 5566.542 kb on - strandat 5566.542 kb on - strandat 5566.705 kb on + strandat 5566.849 kb on - strandat 5566.867 kb on - strandat 5566.936 kb on - strandat 5567.124 kb on - strandat 5567.328 kb on + strand, within BWI76_RS26845at 5567.518 kb on - strand, within BWI76_RS26845at 5567.791 kb on - strand, within BWI76_RS26845at 5567.810 kb on - strand, within BWI76_RS26845at 5567.816 kb on + strand, within BWI76_RS26845at 5567.911 kb on + strand, within BWI76_RS26845at 5567.914 kb on - strand, within BWI76_RS26845

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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5,561,868 - BWI76_RS26830 0.49 -0.3
5,561,876 - BWI76_RS26830 0.50 -1.0
5,562,152 + BWI76_RS26830 0.77 -2.4
5,562,160 - BWI76_RS26830 0.78 -0.1
5,562,324 - -0.8
5,562,454 - BWI76_RS26835 0.13 +1.8
5,562,471 + BWI76_RS26835 0.17 +0.1
5,562,478 - BWI76_RS26835 0.18 +1.1
5,562,484 - BWI76_RS26835 0.19 -0.1
5,562,523 + BWI76_RS26835 0.28 +0.3
5,562,604 + BWI76_RS26835 0.45 +0.5
5,562,612 - BWI76_RS26835 0.46 +0.5
5,562,612 - BWI76_RS26835 0.46 -2.5
5,562,622 - BWI76_RS26835 0.49 +1.3
5,562,657 + BWI76_RS26835 0.56 +0.5
5,562,665 - BWI76_RS26835 0.58 +0.5
5,562,969 - +0.8
5,562,975 - +1.5
5,563,055 + +1.4
5,563,057 + +0.6
5,563,119 + +1.0
5,563,123 - -1.2
5,563,142 - +0.8
5,563,219 + +1.1
5,563,355 - BWI76_RS26840 0.12 +1.2
5,563,497 - BWI76_RS26840 0.16 +0.2
5,563,520 + BWI76_RS26840 0.16 +0.5
5,563,520 + BWI76_RS26840 0.16 +0.3
5,563,528 - +2.0
5,563,788 + BWI76_RS26840 0.23 +1.4
5,563,870 + BWI76_RS26840 0.25 -0.4
5,563,934 - BWI76_RS26840 0.26 +0.2
5,563,975 - BWI76_RS26840 0.27 +1.7
5,564,113 + BWI76_RS26840 0.31 +0.5
5,564,231 + BWI76_RS26840 0.34 +0.6
5,564,239 - BWI76_RS26840 0.34 -0.5
5,564,247 + BWI76_RS26840 0.34 +0.2
5,564,264 + BWI76_RS26840 0.34 +0.7
5,564,367 - BWI76_RS26840 0.37 +0.0
5,564,446 - BWI76_RS26840 0.39 +0.8
5,564,464 + BWI76_RS26840 0.39 +0.2
5,564,503 + BWI76_RS26840 0.40 +0.4
5,564,512 - BWI76_RS26840 0.41 +0.5
5,564,629 - BWI76_RS26840 0.43 +0.1
5,564,700 - BWI76_RS26840 0.45 +0.7
5,564,710 - BWI76_RS26840 0.45 +0.5
5,564,763 - BWI76_RS26840 0.47 +0.5
5,564,784 + BWI76_RS26840 0.47 +0.5
5,564,937 - BWI76_RS26840 0.51 +1.2
5,564,944 + BWI76_RS26840 0.51 +0.3
5,564,996 - BWI76_RS26840 0.53 +0.5
5,565,046 + BWI76_RS26840 0.54 +0.6
5,565,054 - BWI76_RS26840 0.54 -1.0
5,565,134 - BWI76_RS26840 0.56 +0.4
5,565,180 - BWI76_RS26840 0.57 +0.5
5,565,180 - BWI76_RS26840 0.57 +1.3
5,565,243 - BWI76_RS26840 0.59 -1.0
5,565,499 + BWI76_RS26840 0.65 +1.1
5,565,586 - BWI76_RS26840 0.67 +0.9
5,565,617 + BWI76_RS26840 0.68 +0.4
5,565,710 + BWI76_RS26840 0.70 +1.0
5,565,819 + BWI76_RS26840 0.73 +0.5
5,565,968 + BWI76_RS26840 0.76 +1.0
5,565,973 + BWI76_RS26840 0.77 +0.8
5,565,981 - BWI76_RS26840 0.77 +0.2
5,566,046 - BWI76_RS26840 0.78 +0.8
5,566,080 + BWI76_RS26840 0.79 +1.0
5,566,085 + BWI76_RS26840 0.79 -0.1
5,566,085 + BWI76_RS26840 0.79 -0.8
5,566,160 - BWI76_RS26840 0.81 -0.1
5,566,198 - BWI76_RS26840 0.82 +0.9
5,566,208 + BWI76_RS26840 0.82 +1.1
5,566,321 + BWI76_RS26840 0.85 +0.5
5,566,321 + BWI76_RS26840 0.85 +1.1
5,566,429 + BWI76_RS26840 0.88 -1.0
5,566,503 + BWI76_RS26840 0.90 +0.6
5,566,542 - +1.1
5,566,542 - -1.5
5,566,705 + +0.7
5,566,849 - +0.9
5,566,867 - +0.6
5,566,936 - +0.7
5,567,124 - +0.9
5,567,328 + BWI76_RS26845 0.17 +0.4
5,567,518 - BWI76_RS26845 0.25 -0.3
5,567,791 - BWI76_RS26845 0.36 +0.7
5,567,810 - BWI76_RS26845 0.37 -0.7
5,567,816 + BWI76_RS26845 0.37 +0.3
5,567,911 + BWI76_RS26845 0.41 +1.3
5,567,914 - BWI76_RS26845 0.41 +1.2

Or see this region's nucleotide sequence