Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08170

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08160 and BPHYT_RS08165 overlap by 4 nucleotidesBPHYT_RS08165 and BPHYT_RS08170 are separated by 100 nucleotidesBPHYT_RS08170 and BPHYT_RS08175 are separated by 42 nucleotides BPHYT_RS08160: BPHYT_RS08160 - membrane protein, at 1,866,659 to 1,867,159 _RS08160 BPHYT_RS08165: BPHYT_RS08165 - pilus assembly protein TadE, at 1,867,156 to 1,867,653 _RS08165 BPHYT_RS08170: BPHYT_RS08170 - pilus assembly protein CpaB, at 1,867,754 to 1,868,704 _RS08170 BPHYT_RS08175: BPHYT_RS08175 - membrane protein, at 1,868,747 to 1,870,153 _RS08175 Position (kb) 1867 1868 1869Strain fitness (log2 ratio) -1 0 1 2at 1867.010 kb on - strand, within BPHYT_RS08160at 1867.010 kb on - strand, within BPHYT_RS08160at 1867.540 kb on + strand, within BPHYT_RS08165at 1868.606 kb on - strand, within BPHYT_RS08170at 1868.647 kb on + strandat 1868.648 kb on - strandat 1868.648 kb on - strandat 1868.648 kb on - strandat 1868.744 kb on + strandat 1869.102 kb on - strand, within BPHYT_RS08175at 1869.312 kb on + strand, within BPHYT_RS08175

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,867,010 - BPHYT_RS08160 0.70 +1.5
1,867,010 - BPHYT_RS08160 0.70 -0.2
1,867,540 + BPHYT_RS08165 0.77 -1.2
1,868,606 - BPHYT_RS08170 0.90 +0.5
1,868,647 + -0.9
1,868,648 - +0.2
1,868,648 - +0.1
1,868,648 - -1.2
1,868,744 + -0.5
1,869,102 - BPHYT_RS08175 0.25 +1.4
1,869,312 + BPHYT_RS08175 0.40 +2.4

Or see this region's nucleotide sequence