Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30105 and AO356_30110 are separated by 13 nucleotides AO356_30110 and AO356_30115 overlap by 4 nucleotides AO356_30115 and AO356_30120 are separated by 3 nucleotides
AO356_30105: AO356_30105 - sarcosine oxidase subunit beta, at 7,025,675 to 7,026,916
_30105
AO356_30110: AO356_30110 - sarcosine oxidase subunit delta, at 7,026,930 to 7,027,232
_30110
AO356_30115: AO356_30115 - aminomethyltransferase, at 7,027,229 to 7,030,126
_30115
AO356_30120: AO356_30120 - sarcosine oxidase, at 7,030,130 to 7,030,714
_30120
Position (kb) 7027
7028
7029
7030
7031 Strain fitness (log2 ratio) -1
0
1
2 at 7026.509 kb on + strand, within AO356_30105 at 7026.510 kb on - strand, within AO356_30105 at 7026.757 kb on + strand, within AO356_30105 at 7026.985 kb on - strand, within AO356_30110 at 7026.985 kb on - strand, within AO356_30110 at 7026.985 kb on - strand, within AO356_30110 at 7027.048 kb on - strand, within AO356_30110 at 7027.051 kb on + strand, within AO356_30110 at 7027.052 kb on - strand, within AO356_30110 at 7027.052 kb on - strand, within AO356_30110 at 7027.052 kb on - strand, within AO356_30110 at 7027.052 kb on - strand, within AO356_30110 at 7027.114 kb on - strand, within AO356_30110 at 7027.203 kb on - strand at 7027.385 kb on + strand at 7027.386 kb on - strand at 7027.386 kb on - strand at 7027.386 kb on - strand at 7027.589 kb on + strand, within AO356_30115 at 7027.589 kb on + strand, within AO356_30115 at 7027.590 kb on - strand, within AO356_30115 at 7027.592 kb on + strand, within AO356_30115 at 7027.604 kb on + strand, within AO356_30115 at 7027.604 kb on + strand, within AO356_30115 at 7027.605 kb on - strand, within AO356_30115 at 7027.709 kb on + strand, within AO356_30115 at 7027.709 kb on + strand, within AO356_30115 at 7027.838 kb on + strand, within AO356_30115 at 7027.838 kb on + strand, within AO356_30115 at 7027.839 kb on - strand, within AO356_30115 at 7027.967 kb on + strand, within AO356_30115 at 7027.967 kb on + strand, within AO356_30115 at 7027.967 kb on + strand, within AO356_30115 at 7027.997 kb on + strand, within AO356_30115 at 7027.997 kb on + strand, within AO356_30115 at 7027.997 kb on + strand, within AO356_30115 at 7027.997 kb on + strand, within AO356_30115 at 7027.998 kb on - strand, within AO356_30115 at 7027.998 kb on - strand, within AO356_30115 at 7027.998 kb on - strand, within AO356_30115 at 7027.998 kb on - strand, within AO356_30115 at 7028.120 kb on + strand, within AO356_30115 at 7028.121 kb on - strand, within AO356_30115 at 7028.175 kb on - strand, within AO356_30115 at 7028.288 kb on + strand, within AO356_30115 at 7028.288 kb on + strand, within AO356_30115 at 7028.312 kb on + strand, within AO356_30115 at 7028.312 kb on + strand, within AO356_30115 at 7028.344 kb on + strand, within AO356_30115 at 7028.344 kb on + strand, within AO356_30115 at 7028.345 kb on - strand, within AO356_30115 at 7028.421 kb on + strand, within AO356_30115 at 7028.421 kb on + strand, within AO356_30115 at 7028.442 kb on - strand, within AO356_30115 at 7028.686 kb on + strand, within AO356_30115 at 7028.686 kb on + strand, within AO356_30115 at 7028.686 kb on + strand, within AO356_30115 at 7028.686 kb on + strand, within AO356_30115 at 7028.687 kb on - strand, within AO356_30115 at 7029.062 kb on + strand, within AO356_30115 at 7029.066 kb on - strand, within AO356_30115 at 7029.206 kb on + strand, within AO356_30115 at 7029.206 kb on + strand, within AO356_30115 at 7029.206 kb on + strand, within AO356_30115 at 7029.207 kb on - strand, within AO356_30115 at 7029.207 kb on - strand, within AO356_30115 at 7029.324 kb on - strand, within AO356_30115 at 7029.596 kb on + strand, within AO356_30115 at 7029.596 kb on + strand, within AO356_30115 at 7030.086 kb on + strand at 7030.124 kb on + strand at 7030.124 kb on + strand at 7030.124 kb on + strand at 7030.253 kb on + strand, within AO356_30120 at 7030.275 kb on + strand, within AO356_30120 at 7030.349 kb on + strand, within AO356_30120 at 7030.433 kb on + strand, within AO356_30120 at 7030.433 kb on + strand, within AO356_30120 at 7030.434 kb on - strand, within AO356_30120 at 7030.434 kb on - strand, within AO356_30120 at 7030.732 kb on - strand at 7030.732 kb on - strand at 7030.779 kb on + strand at 7030.780 kb on - strand at 7030.780 kb on - strand at 7030.780 kb on - strand at 7030.780 kb on - strand at 7030.880 kb on + strand at 7031.012 kb on - strand at 7031.077 kb on + strand at 7031.078 kb on - strand at 7031.108 kb on + strand at 7031.108 kb on + strand at 7031.108 kb on + strand at 7031.109 kb on - strand at 7031.119 kb on + strand at 7031.119 kb on + strand at 7031.119 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 7,026,509 + AO356_30105 0.67 +0.3 7,026,510 - AO356_30105 0.67 -0.7 7,026,757 + AO356_30105 0.87 -0.0 7,026,985 - AO356_30110 0.18 -0.2 7,026,985 - AO356_30110 0.18 +0.3 7,026,985 - AO356_30110 0.18 +0.3 7,027,048 - AO356_30110 0.39 -0.0 7,027,051 + AO356_30110 0.40 -0.3 7,027,052 - AO356_30110 0.40 +0.7 7,027,052 - AO356_30110 0.40 +0.2 7,027,052 - AO356_30110 0.40 -1.3 7,027,052 - AO356_30110 0.40 -0.5 7,027,114 - AO356_30110 0.61 +0.5 7,027,203 - -0.3 7,027,385 + -1.0 7,027,386 - +0.7 7,027,386 - +0.1 7,027,386 - -0.2 7,027,589 + AO356_30115 0.12 +0.1 7,027,589 + AO356_30115 0.12 -0.7 7,027,590 - AO356_30115 0.12 -0.8 7,027,592 + AO356_30115 0.13 -0.2 7,027,604 + AO356_30115 0.13 -0.0 7,027,604 + AO356_30115 0.13 +0.1 7,027,605 - AO356_30115 0.13 -0.6 7,027,709 + AO356_30115 0.17 +0.8 7,027,709 + AO356_30115 0.17 -0.4 7,027,838 + AO356_30115 0.21 -0.1 7,027,838 + AO356_30115 0.21 -0.4 7,027,839 - AO356_30115 0.21 +0.3 7,027,967 + AO356_30115 0.25 -0.5 7,027,967 + AO356_30115 0.25 +0.3 7,027,967 + AO356_30115 0.25 +0.4 7,027,997 + AO356_30115 0.27 +0.2 7,027,997 + AO356_30115 0.27 +0.4 7,027,997 + AO356_30115 0.27 +0.2 7,027,997 + AO356_30115 0.27 +1.6 7,027,998 - AO356_30115 0.27 -1.0 7,027,998 - AO356_30115 0.27 +0.6 7,027,998 - AO356_30115 0.27 +0.0 7,027,998 - AO356_30115 0.27 +0.2 7,028,120 + AO356_30115 0.31 -0.1 7,028,121 - AO356_30115 0.31 +1.1 7,028,175 - AO356_30115 0.33 +0.0 7,028,288 + AO356_30115 0.37 +0.2 7,028,288 + AO356_30115 0.37 +0.9 7,028,312 + AO356_30115 0.37 +0.6 7,028,312 + AO356_30115 0.37 -0.0 7,028,344 + AO356_30115 0.38 -0.2 7,028,344 + AO356_30115 0.38 +0.5 7,028,345 - AO356_30115 0.39 -0.6 7,028,421 + AO356_30115 0.41 +0.8 7,028,421 + AO356_30115 0.41 -0.1 7,028,442 - AO356_30115 0.42 -0.4 7,028,686 + AO356_30115 0.50 +0.1 7,028,686 + AO356_30115 0.50 -0.1 7,028,686 + AO356_30115 0.50 -0.3 7,028,686 + AO356_30115 0.50 +1.8 7,028,687 - AO356_30115 0.50 +0.2 7,029,062 + AO356_30115 0.63 +0.9 7,029,066 - AO356_30115 0.63 -0.0 7,029,206 + AO356_30115 0.68 +0.2 7,029,206 + AO356_30115 0.68 -1.6 7,029,206 + AO356_30115 0.68 -0.3 7,029,207 - AO356_30115 0.68 -0.5 7,029,207 - AO356_30115 0.68 +0.9 7,029,324 - AO356_30115 0.72 +0.7 7,029,596 + AO356_30115 0.82 -0.4 7,029,596 + AO356_30115 0.82 -1.2 7,030,086 + +0.7 7,030,124 + +1.1 7,030,124 + -0.4 7,030,124 + -0.1 7,030,253 + AO356_30120 0.21 -0.4 7,030,275 + AO356_30120 0.25 +0.7 7,030,349 + AO356_30120 0.37 +0.3 7,030,433 + AO356_30120 0.52 -0.2 7,030,433 + AO356_30120 0.52 -0.3 7,030,434 - AO356_30120 0.52 +0.1 7,030,434 - AO356_30120 0.52 -0.7 7,030,732 - +0.3 7,030,732 - -0.0 7,030,779 + +0.2 7,030,780 - -0.4 7,030,780 - -0.5 7,030,780 - +0.5 7,030,780 - -0.0 7,030,880 + +0.5 7,031,012 - -0.2 7,031,077 + -0.4 7,031,078 - -1.0 7,031,108 + -0.4 7,031,108 + +0.5 7,031,108 + -1.1 7,031,109 - +0.4 7,031,119 + +1.7 7,031,119 + +0.1 7,031,119 + -0.6
Or see this region's nucleotide sequence