Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16040

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16035 and AO356_16040 are separated by 108 nucleotidesAO356_16040 and AO356_16045 are separated by 158 nucleotides AO356_16035: AO356_16035 - hypothetical protein, at 3,622,918 to 3,625,863 _16035 AO356_16040: AO356_16040 - SAM-dependent methyltransferase, at 3,625,972 to 3,626,988 _16040 AO356_16045: AO356_16045 - acetyl-CoA synthetase, at 3,627,147 to 3,629,084 _16045 Position (kb) 3625 3626 3627Strain fitness (log2 ratio) -2 -1 0 1at 3625.160 kb on + strand, within AO356_16035at 3625.161 kb on - strand, within AO356_16035at 3625.161 kb on - strand, within AO356_16035at 3625.236 kb on + strand, within AO356_16035at 3625.347 kb on - strand, within AO356_16035at 3625.394 kb on + strand, within AO356_16035at 3625.394 kb on + strand, within AO356_16035at 3625.394 kb on + strand, within AO356_16035at 3625.394 kb on + strand, within AO356_16035at 3625.395 kb on - strand, within AO356_16035at 3625.607 kb on + strandat 3625.796 kb on + strandat 3625.796 kb on + strandat 3625.796 kb on + strandat 3625.865 kb on + strandat 3625.865 kb on + strandat 3625.865 kb on + strandat 3625.865 kb on + strandat 3625.865 kb on + strandat 3625.866 kb on - strandat 3625.866 kb on - strandat 3625.866 kb on - strandat 3625.866 kb on - strandat 3625.892 kb on - strandat 3625.905 kb on - strandat 3625.905 kb on - strandat 3625.929 kb on - strandat 3625.973 kb on + strandat 3626.270 kb on + strand, within AO356_16040at 3626.271 kb on - strand, within AO356_16040at 3626.294 kb on + strand, within AO356_16040at 3626.294 kb on + strand, within AO356_16040at 3626.294 kb on + strand, within AO356_16040at 3626.294 kb on + strand, within AO356_16040at 3626.294 kb on + strand, within AO356_16040at 3626.294 kb on + strand, within AO356_16040at 3626.294 kb on + strand, within AO356_16040at 3626.295 kb on - strand, within AO356_16040at 3626.295 kb on - strand, within AO356_16040at 3626.295 kb on - strand, within AO356_16040at 3626.295 kb on - strand, within AO356_16040at 3626.295 kb on - strand, within AO356_16040at 3626.363 kb on + strand, within AO356_16040at 3626.363 kb on + strand, within AO356_16040at 3626.363 kb on + strand, within AO356_16040at 3626.364 kb on - strand, within AO356_16040at 3626.510 kb on + strand, within AO356_16040at 3626.511 kb on - strand, within AO356_16040at 3626.684 kb on + strand, within AO356_16040at 3626.685 kb on - strand, within AO356_16040at 3626.685 kb on - strand, within AO356_16040at 3626.735 kb on + strand, within AO356_16040at 3626.735 kb on + strand, within AO356_16040at 3626.736 kb on - strand, within AO356_16040at 3627.032 kb on + strandat 3627.032 kb on + strandat 3627.032 kb on + strandat 3627.254 kb on + strandat 3627.255 kb on - strandat 3627.415 kb on + strand, within AO356_16045at 3627.415 kb on + strand, within AO356_16045at 3627.415 kb on + strand, within AO356_16045at 3627.415 kb on + strand, within AO356_16045at 3627.415 kb on + strand, within AO356_16045at 3627.415 kb on + strand, within AO356_16045at 3627.415 kb on + strand, within AO356_16045at 3627.415 kb on + strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.416 kb on - strand, within AO356_16045at 3627.419 kb on + strand, within AO356_16045at 3627.419 kb on + strand, within AO356_16045at 3627.419 kb on + strand, within AO356_16045at 3627.419 kb on + strand, within AO356_16045at 3627.419 kb on + strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.420 kb on - strand, within AO356_16045at 3627.566 kb on - strand, within AO356_16045at 3627.607 kb on + strand, within AO356_16045at 3627.607 kb on + strand, within AO356_16045at 3627.607 kb on + strand, within AO356_16045at 3627.607 kb on + strand, within AO356_16045at 3627.607 kb on + strand, within AO356_16045at 3627.607 kb on + strand, within AO356_16045at 3627.607 kb on + strand, within AO356_16045at 3627.608 kb on - strand, within AO356_16045at 3627.608 kb on - strand, within AO356_16045at 3627.608 kb on - strand, within AO356_16045at 3627.608 kb on - strand, within AO356_16045at 3627.611 kb on - strand, within AO356_16045at 3627.611 kb on - strand, within AO356_16045at 3627.631 kb on + strand, within AO356_16045at 3627.631 kb on + strand, within AO356_16045at 3627.631 kb on + strand, within AO356_16045at 3627.631 kb on + strand, within AO356_16045at 3627.631 kb on + strand, within AO356_16045at 3627.632 kb on - strand, within AO356_16045at 3627.632 kb on - strand, within AO356_16045at 3627.632 kb on - strand, within AO356_16045at 3627.632 kb on - strand, within AO356_16045at 3627.661 kb on + strand, within AO356_16045at 3627.661 kb on + strand, within AO356_16045at 3627.705 kb on + strand, within AO356_16045at 3627.705 kb on + strand, within AO356_16045at 3627.705 kb on + strand, within AO356_16045at 3627.705 kb on + strand, within AO356_16045at 3627.706 kb on - strand, within AO356_16045at 3627.706 kb on - strand, within AO356_16045at 3627.762 kb on + strand, within AO356_16045at 3627.762 kb on + strand, within AO356_16045at 3627.762 kb on + strand, within AO356_16045at 3627.763 kb on - strand, within AO356_16045at 3627.763 kb on - strand, within AO356_16045at 3627.901 kb on + strand, within AO356_16045at 3627.901 kb on + strand, within AO356_16045at 3627.901 kb on + strand, within AO356_16045at 3627.902 kb on - strand, within AO356_16045at 3627.902 kb on - strand, within AO356_16045at 3627.902 kb on - strand, within AO356_16045at 3627.902 kb on - strand, within AO356_16045

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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3,625,160 + AO356_16035 0.76 -0.4
3,625,161 - AO356_16035 0.76 -2.2
3,625,161 - AO356_16035 0.76 -1.4
3,625,236 + AO356_16035 0.79 +0.2
3,625,347 - AO356_16035 0.82 -0.4
3,625,394 + AO356_16035 0.84 +0.7
3,625,394 + AO356_16035 0.84 -0.2
3,625,394 + AO356_16035 0.84 -1.2
3,625,394 + AO356_16035 0.84 -0.7
3,625,395 - AO356_16035 0.84 +1.2
3,625,607 + +0.8
3,625,796 + +0.1
3,625,796 + +0.4
3,625,796 + -0.8
3,625,865 + -0.2
3,625,865 + -0.2
3,625,865 + -0.0
3,625,865 + +0.9
3,625,865 + +0.9
3,625,866 - +0.0
3,625,866 - -0.0
3,625,866 - +0.2
3,625,866 - +0.1
3,625,892 - +0.5
3,625,905 - -0.2
3,625,905 - +1.1
3,625,929 - +0.2
3,625,973 + -0.3
3,626,270 + AO356_16040 0.29 +0.8
3,626,271 - AO356_16040 0.29 +0.2
3,626,294 + AO356_16040 0.32 -1.1
3,626,294 + AO356_16040 0.32 +0.1
3,626,294 + AO356_16040 0.32 +0.6
3,626,294 + AO356_16040 0.32 +0.4
3,626,294 + AO356_16040 0.32 -0.4
3,626,294 + AO356_16040 0.32 +0.2
3,626,294 + AO356_16040 0.32 -0.1
3,626,295 - AO356_16040 0.32 -1.4
3,626,295 - AO356_16040 0.32 +1.1
3,626,295 - AO356_16040 0.32 -0.3
3,626,295 - AO356_16040 0.32 -0.6
3,626,295 - AO356_16040 0.32 +0.6
3,626,363 + AO356_16040 0.38 -1.0
3,626,363 + AO356_16040 0.38 -0.8
3,626,363 + AO356_16040 0.38 +0.2
3,626,364 - AO356_16040 0.39 +0.5
3,626,510 + AO356_16040 0.53 +0.1
3,626,511 - AO356_16040 0.53 +0.7
3,626,684 + AO356_16040 0.70 -1.0
3,626,685 - AO356_16040 0.70 +0.2
3,626,685 - AO356_16040 0.70 +0.8
3,626,735 + AO356_16040 0.75 +0.7
3,626,735 + AO356_16040 0.75 -0.3
3,626,736 - AO356_16040 0.75 +0.7
3,627,032 + +0.2
3,627,032 + +0.1
3,627,032 + +0.6
3,627,254 + -0.7
3,627,255 - +0.9
3,627,415 + AO356_16045 0.14 -0.4
3,627,415 + AO356_16045 0.14 +0.4
3,627,415 + AO356_16045 0.14 -0.0
3,627,415 + AO356_16045 0.14 +0.6
3,627,415 + AO356_16045 0.14 -0.3
3,627,415 + AO356_16045 0.14 +0.2
3,627,415 + AO356_16045 0.14 +0.5
3,627,415 + AO356_16045 0.14 +0.3
3,627,416 - AO356_16045 0.14 +0.6
3,627,416 - AO356_16045 0.14 +0.1
3,627,416 - AO356_16045 0.14 -0.7
3,627,416 - AO356_16045 0.14 -0.5
3,627,416 - AO356_16045 0.14 +0.2
3,627,416 - AO356_16045 0.14 +0.5
3,627,416 - AO356_16045 0.14 +0.1
3,627,416 - AO356_16045 0.14 +0.4
3,627,416 - AO356_16045 0.14 +0.3
3,627,416 - AO356_16045 0.14 -0.2
3,627,416 - AO356_16045 0.14 +0.1
3,627,416 - AO356_16045 0.14 -1.2
3,627,416 - AO356_16045 0.14 +1.1
3,627,416 - AO356_16045 0.14 -0.5
3,627,416 - AO356_16045 0.14 +0.3
3,627,416 - AO356_16045 0.14 +0.6
3,627,416 - AO356_16045 0.14 -0.0
3,627,416 - AO356_16045 0.14 +0.1
3,627,416 - AO356_16045 0.14 +0.7
3,627,416 - AO356_16045 0.14 +0.6
3,627,416 - AO356_16045 0.14 +1.2
3,627,416 - AO356_16045 0.14 -0.3
3,627,416 - AO356_16045 0.14 +0.1
3,627,419 + AO356_16045 0.14 +0.8
3,627,419 + AO356_16045 0.14 +0.0
3,627,419 + AO356_16045 0.14 -0.4
3,627,419 + AO356_16045 0.14 +0.2
3,627,419 + AO356_16045 0.14 -1.1
3,627,420 - AO356_16045 0.14 -0.3
3,627,420 - AO356_16045 0.14 +0.7
3,627,420 - AO356_16045 0.14 +1.0
3,627,420 - AO356_16045 0.14 +0.1
3,627,420 - AO356_16045 0.14 +0.3
3,627,420 - AO356_16045 0.14 +0.1
3,627,420 - AO356_16045 0.14 -0.0
3,627,420 - AO356_16045 0.14 +1.6
3,627,420 - AO356_16045 0.14 -0.1
3,627,566 - AO356_16045 0.22 -0.5
3,627,607 + AO356_16045 0.24 +0.2
3,627,607 + AO356_16045 0.24 +0.4
3,627,607 + AO356_16045 0.24 +0.0
3,627,607 + AO356_16045 0.24 +0.1
3,627,607 + AO356_16045 0.24 +0.2
3,627,607 + AO356_16045 0.24 +1.4
3,627,607 + AO356_16045 0.24 +0.6
3,627,608 - AO356_16045 0.24 +0.9
3,627,608 - AO356_16045 0.24 +0.8
3,627,608 - AO356_16045 0.24 +0.0
3,627,608 - AO356_16045 0.24 -0.7
3,627,611 - AO356_16045 0.24 -0.2
3,627,611 - AO356_16045 0.24 +0.0
3,627,631 + AO356_16045 0.25 +1.5
3,627,631 + AO356_16045 0.25 -0.5
3,627,631 + AO356_16045 0.25 +0.1
3,627,631 + AO356_16045 0.25 +0.6
3,627,631 + AO356_16045 0.25 -0.9
3,627,632 - AO356_16045 0.25 +0.7
3,627,632 - AO356_16045 0.25 +0.2
3,627,632 - AO356_16045 0.25 -0.7
3,627,632 - AO356_16045 0.25 -0.3
3,627,661 + AO356_16045 0.27 -0.3
3,627,661 + AO356_16045 0.27 +0.3
3,627,705 + AO356_16045 0.29 -0.3
3,627,705 + AO356_16045 0.29 -1.2
3,627,705 + AO356_16045 0.29 +1.0
3,627,705 + AO356_16045 0.29 -0.8
3,627,706 - AO356_16045 0.29 +0.7
3,627,706 - AO356_16045 0.29 -0.3
3,627,762 + AO356_16045 0.32 -0.5
3,627,762 + AO356_16045 0.32 +0.4
3,627,762 + AO356_16045 0.32 +0.4
3,627,763 - AO356_16045 0.32 +0.1
3,627,763 - AO356_16045 0.32 +0.1
3,627,901 + AO356_16045 0.39 -0.3
3,627,901 + AO356_16045 0.39 +0.2
3,627,901 + AO356_16045 0.39 +0.0
3,627,902 - AO356_16045 0.39 +1.0
3,627,902 - AO356_16045 0.39 +0.6
3,627,902 - AO356_16045 0.39 -0.4
3,627,902 - AO356_16045 0.39 -0.0

Or see this region's nucleotide sequence