Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09380 and AO356_09385 are separated by 10 nucleotides AO356_09385 and AO356_09390 are separated by 179 nucleotides AO356_09390 and AO356_09395 are separated by 4 nucleotides
AO356_09380: AO356_09380 - cell division protein, at 2,123,929 to 2,125,503
_09380
AO356_09385: AO356_09385 - 3-dehydroquinate synthase, at 2,125,514 to 2,126,614
_09385
AO356_09390: AO356_09390 - shikimate kinase, at 2,126,794 to 2,127,312
_09390
AO356_09395: AO356_09395 - fimbrial protein, at 2,127,317 to 2,129,404
_09395
Position (kb)
2125
2126
2127 Strain fitness (log2 ratio)
-2
-1
0
1 at 2124.589 kb on - strand, within AO356_09380 at 2124.712 kb on + strand, within AO356_09380 at 2124.712 kb on + strand, within AO356_09380 at 2124.712 kb on + strand, within AO356_09380 at 2124.712 kb on + strand, within AO356_09380 at 2124.712 kb on + strand, within AO356_09380 at 2124.712 kb on + strand, within AO356_09380 at 2124.713 kb on - strand, within AO356_09380 at 2124.713 kb on - strand, within AO356_09380 at 2124.713 kb on - strand, within AO356_09380 at 2124.713 kb on - strand, within AO356_09380 at 2124.713 kb on - strand, within AO356_09380 at 2124.713 kb on - strand, within AO356_09380 at 2124.741 kb on + strand, within AO356_09380 at 2124.741 kb on + strand, within AO356_09380 at 2124.741 kb on + strand, within AO356_09380 at 2124.741 kb on + strand, within AO356_09380 at 2124.741 kb on + strand, within AO356_09380 at 2124.742 kb on - strand, within AO356_09380 at 2124.742 kb on - strand, within AO356_09380 at 2124.742 kb on - strand, within AO356_09380 at 2124.914 kb on + strand, within AO356_09380 at 2124.914 kb on + strand, within AO356_09380 at 2124.914 kb on + strand, within AO356_09380 at 2124.915 kb on - strand, within AO356_09380 at 2124.915 kb on - strand, within AO356_09380 at 2124.915 kb on - strand, within AO356_09380 at 2124.915 kb on - strand, within AO356_09380 at 2124.938 kb on + strand, within AO356_09380 at 2124.939 kb on - strand, within AO356_09380 at 2125.121 kb on + strand, within AO356_09380 at 2125.121 kb on + strand, within AO356_09380 at 2125.122 kb on - strand, within AO356_09380 at 2125.122 kb on - strand, within AO356_09380 at 2125.122 kb on - strand, within AO356_09380 at 2125.122 kb on - strand, within AO356_09380 at 2125.284 kb on + strand, within AO356_09380 at 2125.284 kb on + strand, within AO356_09380 at 2125.362 kb on - strand at 2125.497 kb on + strand at 2125.497 kb on + strand at 2125.497 kb on + strand at 2125.497 kb on + strand at 2125.497 kb on + strand at 2125.498 kb on - strand at 2125.498 kb on - strand at 2125.498 kb on - strand at 2125.498 kb on - strand at 2125.498 kb on - strand at 2125.512 kb on + strand at 2125.512 kb on + strand at 2125.512 kb on + strand at 2125.512 kb on + strand at 2125.513 kb on - strand at 2125.513 kb on - strand at 2125.513 kb on - strand at 2125.516 kb on - strand at 2125.522 kb on + strand at 2126.659 kb on - strand at 2126.681 kb on - strand at 2126.681 kb on - strand at 2126.681 kb on - strand at 2126.681 kb on - strand at 2127.426 kb on + strand at 2127.427 kb on - strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.458 kb on + strand at 2127.458 kb on + strand at 2127.458 kb on + strand at 2127.458 kb on + strand at 2127.459 kb on - strand at 2127.459 kb on - strand at 2127.459 kb on - strand at 2127.475 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 2,124,589 - AO356_09380 0.42 -0.0 2,124,712 + AO356_09380 0.50 -0.0 2,124,712 + AO356_09380 0.50 +0.3 2,124,712 + AO356_09380 0.50 +0.6 2,124,712 + AO356_09380 0.50 -0.2 2,124,712 + AO356_09380 0.50 +0.4 2,124,712 + AO356_09380 0.50 -0.4 2,124,713 - AO356_09380 0.50 -0.1 2,124,713 - AO356_09380 0.50 +0.5 2,124,713 - AO356_09380 0.50 +0.3 2,124,713 - AO356_09380 0.50 +1.0 2,124,713 - AO356_09380 0.50 -1.1 2,124,713 - AO356_09380 0.50 -0.5 2,124,741 + AO356_09380 0.52 +0.6 2,124,741 + AO356_09380 0.52 +0.6 2,124,741 + AO356_09380 0.52 -0.6 2,124,741 + AO356_09380 0.52 -0.8 2,124,741 + AO356_09380 0.52 +0.2 2,124,742 - AO356_09380 0.52 -0.1 2,124,742 - AO356_09380 0.52 -1.1 2,124,742 - AO356_09380 0.52 +1.0 2,124,914 + AO356_09380 0.63 -0.2 2,124,914 + AO356_09380 0.63 +0.5 2,124,914 + AO356_09380 0.63 +0.8 2,124,915 - AO356_09380 0.63 +0.5 2,124,915 - AO356_09380 0.63 +0.3 2,124,915 - AO356_09380 0.63 -0.2 2,124,915 - AO356_09380 0.63 +0.6 2,124,938 + AO356_09380 0.64 +0.2 2,124,939 - AO356_09380 0.64 -1.7 2,125,121 + AO356_09380 0.76 +1.1 2,125,121 + AO356_09380 0.76 +0.4 2,125,122 - AO356_09380 0.76 +0.7 2,125,122 - AO356_09380 0.76 -1.0 2,125,122 - AO356_09380 0.76 +0.8 2,125,122 - AO356_09380 0.76 +0.7 2,125,284 + AO356_09380 0.86 -0.4 2,125,284 + AO356_09380 0.86 +0.6 2,125,362 - -0.6 2,125,497 + -0.9 2,125,497 + -0.9 2,125,497 + -0.2 2,125,497 + -0.1 2,125,497 + -0.2 2,125,498 - +0.2 2,125,498 - +1.0 2,125,498 - +0.1 2,125,498 - +1.7 2,125,498 - -0.0 2,125,512 + +0.1 2,125,512 + +1.0 2,125,512 + +0.2 2,125,512 + +0.2 2,125,513 - +0.5 2,125,513 - +0.8 2,125,513 - -0.3 2,125,516 - +1.1 2,125,522 + -0.2 2,126,659 - +0.5 2,126,681 - +0.5 2,126,681 - -0.2 2,126,681 - +0.1 2,126,681 - +0.3 2,127,426 + -2.2 2,127,427 - -0.9 2,127,454 + -0.2 2,127,454 + -1.6 2,127,454 + -0.3 2,127,454 + +0.3 2,127,454 + -0.7 2,127,454 + +0.5 2,127,454 + -0.1 2,127,455 - +0.4 2,127,455 - -0.7 2,127,455 - -0.8 2,127,455 - +0.2 2,127,455 - +0.6 2,127,455 - +0.2 2,127,455 - +0.3 2,127,455 - +1.0 2,127,455 - +0.4 2,127,455 - +0.3 2,127,455 - +0.5 2,127,455 - +0.0 2,127,458 + -1.1 2,127,458 + -0.7 2,127,458 + -1.4 2,127,458 + -0.5 2,127,459 - +0.8 2,127,459 - +1.0 2,127,459 - -0.6 2,127,475 + -0.9
Or see this region's nucleotide sequence