Strain Fitness in Shewanella loihica PV-4 around Shew_3475

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3474 and Shew_3475 are separated by 238 nucleotidesShew_3475 and Shew_3476 are separated by 156 nucleotides Shew_3474: Shew_3474 - ATP-dependent DNA helicase RecQ (RefSeq), at 4,160,255 to 4,162,087 _3474 Shew_3475: Shew_3475 - hypothetical protein (RefSeq), at 4,162,326 to 4,162,790 _3475 Shew_3476: Shew_3476 - transporter DMT superfamily protein (RefSeq), at 4,162,947 to 4,163,834 _3476 Position (kb) 4162 4163Strain fitness (log2 ratio) -1 0 1at 4161.971 kb on - strandat 4161.994 kb on - strandat 4161.994 kb on - strandat 4162.141 kb on + strandat 4162.307 kb on - strandat 4162.312 kb on - strandat 4162.353 kb on - strandat 4162.632 kb on - strand, within Shew_3475at 4162.848 kb on + strandat 4162.856 kb on - strandat 4162.921 kb on + strandat 4163.023 kb on + strandat 4163.084 kb on - strand, within Shew_3476at 4163.170 kb on - strand, within Shew_3476at 4163.296 kb on + strand, within Shew_3476at 4163.755 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,161,971 - +0.8
4,161,994 - -0.7
4,161,994 - -0.4
4,162,141 + -1.4
4,162,307 - +0.0
4,162,312 - -0.5
4,162,353 - +0.2
4,162,632 - Shew_3475 0.66 +0.1
4,162,848 + +0.2
4,162,856 - +0.2
4,162,921 + +0.7
4,163,023 + -1.6
4,163,084 - Shew_3476 0.15 +1.1
4,163,170 - Shew_3476 0.25 -0.6
4,163,296 + Shew_3476 0.39 -0.4
4,163,755 - +0.1

Or see this region's nucleotide sequence