Strain Fitness in Shewanella loihica PV-4 around Shew_3122

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3120 and Shew_3121 are separated by 152 nucleotidesShew_3121 and Shew_3122 are separated by 168 nucleotidesShew_3122 and Shew_3123 are separated by 132 nucleotides Shew_3120: Shew_3120 - phosphate-selective porin O and P (RefSeq), at 3,707,988 to 3,709,160 _3120 Shew_3121: Shew_3121 - FMN-binding domain-containing protein (RefSeq), at 3,709,313 to 3,709,828 _3121 Shew_3122: Shew_3122 - PepSY-associated TM helix domain-containing protein (RefSeq), at 3,709,997 to 3,710,797 _3122 Shew_3123: Shew_3123 - penicillin-binding protein 1B (RefSeq), at 3,710,930 to 3,713,299 _3123 Position (kb) 3709 3710 3711Strain fitness (log2 ratio) -1 0 1at 3709.090 kb on - strandat 3709.240 kb on - strandat 3709.326 kb on + strandat 3709.452 kb on + strand, within Shew_3121at 3709.644 kb on - strand, within Shew_3121at 3709.797 kb on + strandat 3709.860 kb on - strandat 3709.896 kb on + strandat 3710.460 kb on - strand, within Shew_3122at 3710.809 kb on + strandat 3710.809 kb on + strandat 3710.817 kb on - strandat 3710.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,709,090 - -0.0
3,709,240 - -0.5
3,709,326 + +1.3
3,709,452 + Shew_3121 0.27 -0.1
3,709,644 - Shew_3121 0.64 +0.8
3,709,797 + +0.2
3,709,860 - +0.2
3,709,896 + +0.2
3,710,460 - Shew_3122 0.58 +1.5
3,710,809 + +0.6
3,710,809 + -1.5
3,710,817 - +0.2
3,710,893 - +0.3

Or see this region's nucleotide sequence