Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3120 and Shew_3121 are separated by 152 nucleotides Shew_3121 and Shew_3122 are separated by 168 nucleotides Shew_3122 and Shew_3123 are separated by 132 nucleotides
Shew_3120: Shew_3120 - phosphate-selective porin O and P (RefSeq), at 3,707,988 to 3,709,160
_3120
Shew_3121: Shew_3121 - FMN-binding domain-containing protein (RefSeq), at 3,709,313 to 3,709,828
_3121
Shew_3122: Shew_3122 - PepSY-associated TM helix domain-containing protein (RefSeq), at 3,709,997 to 3,710,797
_3122
Shew_3123: Shew_3123 - penicillin-binding protein 1B (RefSeq), at 3,710,930 to 3,713,299
_3123
Position (kb)
3709
3710
3711 Strain fitness (log2 ratio)
-1
0
1 at 3709.090 kb on - strand at 3709.240 kb on - strand at 3709.326 kb on + strand at 3709.452 kb on + strand, within Shew_3121 at 3709.644 kb on - strand, within Shew_3121 at 3709.797 kb on + strand at 3709.860 kb on - strand at 3709.896 kb on + strand at 3710.460 kb on - strand, within Shew_3122 at 3710.809 kb on + strand at 3710.809 kb on + strand at 3710.817 kb on - strand at 3710.893 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,709,090 - -0.0 3,709,240 - -0.5 3,709,326 + +1.3 3,709,452 + Shew_3121 0.27 -0.1 3,709,644 - Shew_3121 0.64 +0.8 3,709,797 + +0.2 3,709,860 - +0.2 3,709,896 + +0.2 3,710,460 - Shew_3122 0.58 +1.5 3,710,809 + +0.6 3,710,809 + -1.5 3,710,817 - +0.2 3,710,893 - +0.3
Or see this region's nucleotide sequence