Strain Fitness in Shewanella loihica PV-4 around Shew_2232

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2231 and Shew_2232 are separated by 120 nucleotidesShew_2232 and Shew_2233 are separated by 155 nucleotidesShew_2233 and Shew_2234 are separated by 2 nucleotides Shew_2231: Shew_2231 - thioredoxin domain-containing protein (RefSeq), at 2,607,656 to 2,608,495 _2231 Shew_2232: Shew_2232 - heat shock protein 90 (RefSeq), at 2,608,616 to 2,610,535 _2232 Shew_2233: Shew_2233 - recombination protein RecR (RefSeq), at 2,610,691 to 2,611,290 _2233 Shew_2234: Shew_2234 - hypothetical protein (RefSeq), at 2,611,293 to 2,611,622 _2234 Position (kb) 2608 2609 2610 2611Strain fitness (log2 ratio) -2 -1 0 1at 2607.993 kb on - strand, within Shew_2231at 2608.178 kb on - strand, within Shew_2231at 2608.398 kb on - strand, within Shew_2231at 2608.403 kb on - strand, within Shew_2231at 2608.511 kb on - strandat 2609.676 kb on - strand, within Shew_2232at 2610.772 kb on - strand, within Shew_2233

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,607,993 - Shew_2231 0.40 +0.6
2,608,178 - Shew_2231 0.62 -0.5
2,608,398 - Shew_2231 0.88 -0.1
2,608,403 - Shew_2231 0.89 +0.2
2,608,511 - +0.4
2,609,676 - Shew_2232 0.55 -0.2
2,610,772 - Shew_2233 0.14 -1.9

Or see this region's nucleotide sequence