Strain Fitness in Shewanella loihica PV-4 around Shew_1014

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1013 and Shew_1014 are separated by 480 nucleotidesShew_1014 and Shew_1015 are separated by 51 nucleotides Shew_1013: Shew_1013 - aspartate carbamoyltransferase (RefSeq), at 1,172,369 to 1,173,388 _1013 Shew_1014: Shew_1014 - XRE family transcriptional regulator (RefSeq), at 1,173,869 to 1,174,375 _1014 Shew_1015: Shew_1015 - Cl- channel, voltage-gated family protein (RefSeq), at 1,174,427 to 1,176,136 _1015 Position (kb) 1173 1174 1175Strain fitness (log2 ratio) -1 0 1at 1173.126 kb on + strand, within Shew_1013at 1173.126 kb on + strand, within Shew_1013at 1173.126 kb on + strand, within Shew_1013at 1173.134 kb on - strand, within Shew_1013at 1173.193 kb on - strand, within Shew_1013at 1174.232 kb on + strand, within Shew_1014at 1174.573 kb on + strandat 1174.598 kb on + strand, within Shew_1015at 1174.966 kb on - strand, within Shew_1015at 1175.302 kb on + strand, within Shew_1015

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,173,126 + Shew_1013 0.74 +1.2
1,173,126 + Shew_1013 0.74 +1.0
1,173,126 + Shew_1013 0.74 +0.9
1,173,134 - Shew_1013 0.75 +1.2
1,173,193 - Shew_1013 0.81 +1.1
1,174,232 + Shew_1014 0.72 +0.9
1,174,573 + +1.0
1,174,598 + Shew_1015 0.10 -0.1
1,174,966 - Shew_1015 0.32 +0.3
1,175,302 + Shew_1015 0.51 +0.8

Or see this region's nucleotide sequence