Strain Fitness in Shewanella loihica PV-4 around Shew_0933

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0932 and Shew_0933 are separated by 39 nucleotidesShew_0933 and Shew_0934 are separated by 115 nucleotides Shew_0932: Shew_0932 - radical SAM domain-containing protein (RefSeq), at 1,065,921 to 1,067,009 _0932 Shew_0933: Shew_0933 - methyltransferase type 11 (RefSeq), at 1,067,049 to 1,067,720 _0933 Shew_0934: Shew_0934 - TPR repeat-containing protein (RefSeq), at 1,067,836 to 1,068,750 _0934 Position (kb) 1067 1068Strain fitness (log2 ratio) -1 0 1at 1066.196 kb on - strand, within Shew_0932at 1066.713 kb on - strand, within Shew_0932at 1066.784 kb on + strand, within Shew_0932at 1067.103 kb on + strandat 1067.349 kb on + strand, within Shew_0933at 1067.349 kb on + strand, within Shew_0933at 1067.887 kb on - strandat 1067.987 kb on - strand, within Shew_0934at 1068.174 kb on + strand, within Shew_0934at 1068.293 kb on + strand, within Shew_0934at 1068.301 kb on - strand, within Shew_0934at 1068.574 kb on - strand, within Shew_0934

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,066,196 - Shew_0932 0.25 -0.4
1,066,713 - Shew_0932 0.73 -0.4
1,066,784 + Shew_0932 0.79 -0.0
1,067,103 + +0.0
1,067,349 + Shew_0933 0.45 -0.1
1,067,349 + Shew_0933 0.45 -1.4
1,067,887 - +1.4
1,067,987 - Shew_0934 0.17 -0.0
1,068,174 + Shew_0934 0.37 -0.6
1,068,293 + Shew_0934 0.50 +0.1
1,068,301 - Shew_0934 0.51 -0.2
1,068,574 - Shew_0934 0.81 +1.0

Or see this region's nucleotide sequence