Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0813 and Shew_0814 are separated by 44 nucleotides Shew_0814 and Shew_0815 are separated by 357 nucleotides Shew_0815 and Shew_0816 are separated by 263 nucleotides Shew_0816 and Shew_0817 are separated by 11 nucleotides
Shew_0813: Shew_0813 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 935,718 to 938,231
_0813
Shew_0814: Shew_0814 - pseudouridine synthase (RefSeq), at 938,276 to 938,824
_0814
Shew_0815: Shew_0815 - Glucosamine-6-phosphate deaminase (EC 3.5.99.6) <small>(from data)</small>, at 939,182 to 939,988
_0815
Shew_0816: Shew_0816 - hypothetical protein (RefSeq), at 940,252 to 940,788
_0816
Shew_0817: Shew_0817 - cupin 2 domain-containing protein (RefSeq), at 940,800 to 941,117
_0817
Position (kb) 939
940 Strain fitness (log2 ratio) -1
0
1 at 938.210 kb on - strand at 938.281 kb on - strand at 938.372 kb on + strand, within Shew_0814 at 938.777 kb on - strand at 939.056 kb on + strand at 939.369 kb on + strand, within Shew_0815 at 939.615 kb on + strand, within Shew_0815 at 939.623 kb on - strand, within Shew_0815 at 939.787 kb on + strand, within Shew_0815 at 939.789 kb on - strand, within Shew_0815 at 939.809 kb on + strand, within Shew_0815 at 940.489 kb on - strand, within Shew_0816 at 940.722 kb on + strand, within Shew_0816 at 940.773 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 938,210 - -0.0 938,281 - +1.3 938,372 + Shew_0814 0.17 +0.3 938,777 - +0.1 939,056 + -0.6 939,369 + Shew_0815 0.23 +0.1 939,615 + Shew_0815 0.54 +0.3 939,623 - Shew_0815 0.55 +0.8 939,787 + Shew_0815 0.75 +0.4 939,789 - Shew_0815 0.75 +0.9 939,809 + Shew_0815 0.78 +0.2 940,489 - Shew_0816 0.44 -0.4 940,722 + Shew_0816 0.88 +0.5 940,773 + -0.3
Or see this region's nucleotide sequence