Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0748 and Shew_0749 are separated by 71 nucleotides Shew_0749 and Shew_0750 are separated by 62 nucleotides Shew_0750 and Shew_0751 are separated by 69 nucleotides
Shew_0748: Shew_0748 - acetyltransferase (RefSeq), at 849,062 to 849,622
_0748
Shew_0749: Shew_0749 - hypothetical protein (RefSeq), at 849,694 to 850,038
_0749
Shew_0750: Shew_0750 - hypothetical protein (RefSeq), at 850,101 to 850,538
_0750
Shew_0751: Shew_0751 - S-adenosylmethionine synthetase (RefSeq), at 850,608 to 851,759
_0751
Position (kb) 850
851 Strain fitness (log2 ratio) -2
-1
0
1
2 at 849.141 kb on + strand, within Shew_0748 at 849.330 kb on - strand, within Shew_0748 at 849.404 kb on - strand, within Shew_0748 at 849.417 kb on + strand, within Shew_0748 at 849.417 kb on + strand, within Shew_0748 at 849.543 kb on - strand, within Shew_0748 at 849.617 kb on + strand at 849.775 kb on - strand, within Shew_0749 at 849.838 kb on - strand, within Shew_0749 at 850.103 kb on + strand at 850.111 kb on + strand at 850.119 kb on - strand at 850.189 kb on - strand, within Shew_0750 at 850.431 kb on + strand, within Shew_0750
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 849,141 + Shew_0748 0.14 +1.0 849,330 - Shew_0748 0.48 -0.1 849,404 - Shew_0748 0.61 +0.9 849,417 + Shew_0748 0.63 -0.1 849,417 + Shew_0748 0.63 -2.7 849,543 - Shew_0748 0.86 -0.3 849,617 + -0.5 849,775 - Shew_0749 0.23 +0.7 849,838 - Shew_0749 0.42 -1.8 850,103 + +1.1 850,111 + +0.1 850,119 - -1.1 850,189 - Shew_0750 0.20 -0.2 850,431 + Shew_0750 0.75 +1.8
Or see this region's nucleotide sequence