Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3741 and Rru_A3742 are separated by 25 nucleotides Rru_A3742 and Rru_A3743 overlap by 4 nucleotides Rru_A3743 and Rru_A3744 are separated by 129 nucleotides Rru_A3744 and Rru_A3745 are separated by 80 nucleotides
Rru_A3741: Rru_A3741 - 3-dehydroquinate synthase (NCBI), at 4,291,370 to 4,292,527
_A3741
Rru_A3742: Rru_A3742 - CBS (NCBI), at 4,292,553 to 4,293,284
_A3742
Rru_A3743: Rru_A3743 - hypothetical protein (NCBI), at 4,293,281 to 4,293,442
_A3743
Rru_A3744: Rru_A3744 - Predicted signal-transduction protein containing CBS domains (NCBI), at 4,293,572 to 4,294,018
_A3744
Rru_A3745: Rru_A3745 - hypothetical protein (NCBI), at 4,294,099 to 4,294,671
_A3745
Position (kb) 4293
4294 Strain fitness (log2 ratio) -1
0
1
2 at 4292.584 kb on + strand at 4292.584 kb on + strand at 4292.585 kb on - strand at 4292.585 kb on - strand at 4292.585 kb on - strand at 4292.896 kb on + strand, within Rru_A3742 at 4292.897 kb on - strand, within Rru_A3742 at 4293.072 kb on + strand, within Rru_A3742 at 4293.072 kb on + strand, within Rru_A3742 at 4293.073 kb on - strand, within Rru_A3742 at 4293.073 kb on - strand, within Rru_A3742 at 4293.073 kb on - strand, within Rru_A3742 at 4293.341 kb on - strand, within Rru_A3743 at 4293.516 kb on + strand at 4293.517 kb on - strand at 4293.694 kb on + strand, within Rru_A3744 at 4293.721 kb on + strand, within Rru_A3744 at 4293.722 kb on - strand, within Rru_A3744 at 4293.722 kb on - strand, within Rru_A3744 at 4293.872 kb on + strand, within Rru_A3744 at 4293.935 kb on + strand, within Rru_A3744 at 4293.993 kb on - strand at 4294.004 kb on + strand at 4294.004 kb on + strand at 4294.005 kb on - strand at 4294.219 kb on + strand, within Rru_A3745 at 4294.219 kb on + strand, within Rru_A3745 at 4294.219 kb on + strand, within Rru_A3745 at 4294.219 kb on + strand, within Rru_A3745
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 4,292,584 + +1.1 4,292,584 + +0.0 4,292,585 - -1.0 4,292,585 - -0.3 4,292,585 - -1.0 4,292,896 + Rru_A3742 0.47 -0.2 4,292,897 - Rru_A3742 0.47 +0.0 4,293,072 + Rru_A3742 0.71 +0.3 4,293,072 + Rru_A3742 0.71 +0.3 4,293,073 - Rru_A3742 0.71 -1.0 4,293,073 - Rru_A3742 0.71 +0.0 4,293,073 - Rru_A3742 0.71 +0.0 4,293,341 - Rru_A3743 0.37 +1.0 4,293,516 + +1.9 4,293,517 - +1.2 4,293,694 + Rru_A3744 0.27 +1.7 4,293,721 + Rru_A3744 0.33 +0.0 4,293,722 - Rru_A3744 0.34 +1.9 4,293,722 - Rru_A3744 0.34 +0.0 4,293,872 + Rru_A3744 0.67 +0.0 4,293,935 + Rru_A3744 0.81 +0.0 4,293,993 - +0.7 4,294,004 + -1.0 4,294,004 + +0.0 4,294,005 - +0.1 4,294,219 + Rru_A3745 0.21 +0.0 4,294,219 + Rru_A3745 0.21 +0.3 4,294,219 + Rru_A3745 0.21 +0.7 4,294,219 + Rru_A3745 0.21 +0.0
Or see this region's nucleotide sequence