Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3735 and Rru_A3736 overlap by 1 nucleotides Rru_A3736 and Rru_A3737 are separated by 90 nucleotides Rru_A3737 and Rru_A3738 are separated by 9 nucleotides Rru_A3738 and Rru_A3739 overlap by 4 nucleotides
Rru_A3735: Rru_A3735 - hypothetical protein (NCBI), at 4,285,412 to 4,285,876
_A3735
Rru_A3736: Rru_A3736 - hypothetical protein (NCBI), at 4,285,876 to 4,286,337
_A3736
Rru_A3737: Rru_A3737 - KAP P-loop (NCBI), at 4,286,428 to 4,287,762
_A3737
Rru_A3738: Rru_A3738 - Phage integrase (NCBI), at 4,287,772 to 4,288,758
_A3738
Rru_A3739: Rru_A3739 - hypothetical protein (NCBI), at 4,288,755 to 4,290,449
_A3739
Position (kb) 4286
4287
4288 Strain fitness (log2 ratio) -1
0
1
2 at 4285.508 kb on - strand, within Rru_A3735 at 4285.906 kb on + strand at 4285.906 kb on + strand at 4285.906 kb on + strand at 4285.907 kb on - strand at 4285.959 kb on + strand, within Rru_A3736 at 4285.981 kb on + strand, within Rru_A3736 at 4285.982 kb on - strand, within Rru_A3736 at 4285.982 kb on - strand, within Rru_A3736 at 4286.029 kb on - strand, within Rru_A3736 at 4286.061 kb on + strand, within Rru_A3736 at 4286.071 kb on + strand, within Rru_A3736 at 4286.072 kb on - strand, within Rru_A3736 at 4286.201 kb on + strand, within Rru_A3736 at 4286.202 kb on - strand, within Rru_A3736 at 4286.202 kb on - strand, within Rru_A3736 at 4286.266 kb on - strand, within Rru_A3736 at 4286.266 kb on - strand, within Rru_A3736 at 4286.266 kb on - strand, within Rru_A3736 at 4286.346 kb on + strand at 4286.346 kb on + strand at 4286.346 kb on + strand at 4286.346 kb on + strand at 4286.347 kb on - strand at 4286.349 kb on - strand at 4286.398 kb on - strand at 4286.423 kb on + strand at 4286.880 kb on + strand, within Rru_A3737 at 4286.881 kb on - strand, within Rru_A3737 at 4286.902 kb on - strand, within Rru_A3737 at 4286.902 kb on - strand, within Rru_A3737 at 4286.911 kb on - strand, within Rru_A3737 at 4287.135 kb on - strand, within Rru_A3737 at 4287.235 kb on + strand, within Rru_A3737 at 4287.728 kb on + strand at 4287.748 kb on - strand at 4287.777 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 4,285,508 - Rru_A3735 0.21 -1.0 4,285,906 + +0.0 4,285,906 + +0.6 4,285,906 + +0.5 4,285,907 - +1.3 4,285,959 + Rru_A3736 0.18 +1.5 4,285,981 + Rru_A3736 0.23 -0.4 4,285,982 - Rru_A3736 0.23 +2.3 4,285,982 - Rru_A3736 0.23 +1.0 4,286,029 - Rru_A3736 0.33 +0.0 4,286,061 + Rru_A3736 0.40 +0.0 4,286,071 + Rru_A3736 0.42 +0.0 4,286,072 - Rru_A3736 0.42 +0.0 4,286,201 + Rru_A3736 0.70 +0.0 4,286,202 - Rru_A3736 0.71 +0.0 4,286,202 - Rru_A3736 0.71 +0.0 4,286,266 - Rru_A3736 0.84 +0.0 4,286,266 - Rru_A3736 0.84 -1.0 4,286,266 - Rru_A3736 0.84 +2.6 4,286,346 + +0.7 4,286,346 + +0.0 4,286,346 + +0.0 4,286,346 + +0.4 4,286,347 - -1.0 4,286,349 - +0.0 4,286,398 - +0.4 4,286,423 + +1.2 4,286,880 + Rru_A3737 0.34 +0.7 4,286,881 - Rru_A3737 0.34 +0.0 4,286,902 - Rru_A3737 0.36 +0.0 4,286,902 - Rru_A3737 0.36 +1.1 4,286,911 - Rru_A3737 0.36 +1.1 4,287,135 - Rru_A3737 0.53 +1.7 4,287,235 + Rru_A3737 0.60 +2.2 4,287,728 + -1.0 4,287,748 - +0.7 4,287,777 + +1.2
Or see this region's nucleotide sequence