Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3688

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3686 and Rru_A3687 are separated by 49 nucleotidesRru_A3687 and Rru_A3688 overlap by 4 nucleotidesRru_A3688 and Rru_A3689 overlap by 4 nucleotidesRru_A3689 and Rru_A3690 overlap by 4 nucleotides Rru_A3686: Rru_A3686 - Alanine dehydrogenase and pyridine nucleotide transhydrogenase (NCBI), at 4,233,317 to 4,234,435 _A3686 Rru_A3687: Rru_A3687 - Cobalt transport protein (NCBI), at 4,234,485 to 4,235,117 _A3687 Rru_A3688: Rru_A3688 - ABC transporter component (NCBI), at 4,235,114 to 4,235,815 _A3688 Rru_A3689: Rru_A3689 - MaoC-like dehydratase (NCBI), at 4,235,812 to 4,236,264 _A3689 Rru_A3690: Rru_A3690 - Glutathione synthetase (NCBI), at 4,236,261 to 4,237,217 _A3690 Position (kb) 4235 4236Strain fitness (log2 ratio) -1 0 1 2at 4234.178 kb on + strand, within Rru_A3686at 4234.178 kb on + strand, within Rru_A3686at 4234.178 kb on + strand, within Rru_A3686at 4234.178 kb on + strand, within Rru_A3686at 4234.178 kb on + strand, within Rru_A3686at 4234.178 kb on + strand, within Rru_A3686at 4234.178 kb on + strand, within Rru_A3686at 4234.179 kb on - strand, within Rru_A3686at 4234.179 kb on - strand, within Rru_A3686at 4234.179 kb on - strand, within Rru_A3686at 4234.179 kb on - strand, within Rru_A3686at 4234.202 kb on + strand, within Rru_A3686at 4234.202 kb on + strand, within Rru_A3686at 4234.202 kb on + strand, within Rru_A3686at 4234.202 kb on + strand, within Rru_A3686at 4234.203 kb on - strand, within Rru_A3686at 4234.216 kb on + strand, within Rru_A3686at 4234.248 kb on - strand, within Rru_A3686at 4234.397 kb on + strandat 4234.397 kb on + strandat 4234.398 kb on - strandat 4234.433 kb on + strandat 4234.793 kb on + strand, within Rru_A3687at 4234.793 kb on + strand, within Rru_A3687at 4234.793 kb on + strand, within Rru_A3687at 4234.794 kb on - strand, within Rru_A3687at 4234.794 kb on - strand, within Rru_A3687at 4234.795 kb on + strand, within Rru_A3687at 4234.795 kb on + strand, within Rru_A3687at 4234.795 kb on + strand, within Rru_A3687at 4234.795 kb on + strand, within Rru_A3687at 4234.795 kb on + strand, within Rru_A3687at 4234.796 kb on - strand, within Rru_A3687at 4234.796 kb on - strand, within Rru_A3687at 4234.963 kb on + strand, within Rru_A3687at 4235.101 kb on + strandat 4235.101 kb on + strandat 4235.101 kb on + strandat 4235.101 kb on + strandat 4235.101 kb on + strandat 4235.102 kb on - strandat 4235.148 kb on + strandat 4235.148 kb on + strandat 4235.148 kb on + strandat 4235.148 kb on + strandat 4235.148 kb on + strandat 4235.149 kb on - strandat 4235.220 kb on + strand, within Rru_A3688at 4235.410 kb on + strand, within Rru_A3688at 4235.410 kb on + strand, within Rru_A3688at 4235.410 kb on + strand, within Rru_A3688at 4235.410 kb on + strand, within Rru_A3688at 4235.410 kb on + strand, within Rru_A3688at 4235.410 kb on + strand, within Rru_A3688at 4235.411 kb on - strand, within Rru_A3688at 4235.411 kb on - strand, within Rru_A3688at 4235.411 kb on - strand, within Rru_A3688at 4235.411 kb on - strand, within Rru_A3688at 4235.411 kb on - strand, within Rru_A3688at 4235.411 kb on - strand, within Rru_A3688at 4235.412 kb on + strand, within Rru_A3688at 4235.413 kb on - strand, within Rru_A3688at 4235.413 kb on - strand, within Rru_A3688at 4235.413 kb on - strand, within Rru_A3688at 4235.901 kb on - strand, within Rru_A3689at 4235.901 kb on - strand, within Rru_A3689at 4235.901 kb on - strand, within Rru_A3689at 4235.901 kb on - strand, within Rru_A3689at 4236.023 kb on + strand, within Rru_A3689at 4236.023 kb on + strand, within Rru_A3689

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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4,234,178 + Rru_A3686 0.77 +0.8
4,234,178 + Rru_A3686 0.77 +0.9
4,234,178 + Rru_A3686 0.77 +0.0
4,234,178 + Rru_A3686 0.77 +1.1
4,234,178 + Rru_A3686 0.77 +0.0
4,234,178 + Rru_A3686 0.77 +0.0
4,234,178 + Rru_A3686 0.77 +0.8
4,234,179 - Rru_A3686 0.77 +0.0
4,234,179 - Rru_A3686 0.77 -0.5
4,234,179 - Rru_A3686 0.77 +1.0
4,234,179 - Rru_A3686 0.77 +0.2
4,234,202 + Rru_A3686 0.79 -1.0
4,234,202 + Rru_A3686 0.79 +0.0
4,234,202 + Rru_A3686 0.79 +0.0
4,234,202 + Rru_A3686 0.79 +0.5
4,234,203 - Rru_A3686 0.79 +0.0
4,234,216 + Rru_A3686 0.80 +1.3
4,234,248 - Rru_A3686 0.83 +0.0
4,234,397 + +2.7
4,234,397 + +0.3
4,234,398 - +1.2
4,234,433 + +0.0
4,234,793 + Rru_A3687 0.49 +0.0
4,234,793 + Rru_A3687 0.49 +0.0
4,234,793 + Rru_A3687 0.49 +0.0
4,234,794 - Rru_A3687 0.49 +0.0
4,234,794 - Rru_A3687 0.49 +0.0
4,234,795 + Rru_A3687 0.49 +1.9
4,234,795 + Rru_A3687 0.49 +0.0
4,234,795 + Rru_A3687 0.49 -1.6
4,234,795 + Rru_A3687 0.49 -1.0
4,234,795 + Rru_A3687 0.49 +0.0
4,234,796 - Rru_A3687 0.49 +0.1
4,234,796 - Rru_A3687 0.49 +0.0
4,234,963 + Rru_A3687 0.76 +0.0
4,235,101 + -1.0
4,235,101 + +1.1
4,235,101 + +1.5
4,235,101 + +1.9
4,235,101 + +0.0
4,235,102 - +1.0
4,235,148 + +1.9
4,235,148 + +0.4
4,235,148 + +0.0
4,235,148 + +0.0
4,235,148 + +1.4
4,235,149 - +1.7
4,235,220 + Rru_A3688 0.15 +0.0
4,235,410 + Rru_A3688 0.42 +0.0
4,235,410 + Rru_A3688 0.42 +1.0
4,235,410 + Rru_A3688 0.42 +0.0
4,235,410 + Rru_A3688 0.42 +1.5
4,235,410 + Rru_A3688 0.42 +0.0
4,235,410 + Rru_A3688 0.42 +0.0
4,235,411 - Rru_A3688 0.42 +0.0
4,235,411 - Rru_A3688 0.42 +1.3
4,235,411 - Rru_A3688 0.42 +0.0
4,235,411 - Rru_A3688 0.42 +0.0
4,235,411 - Rru_A3688 0.42 +0.0
4,235,411 - Rru_A3688 0.42 +0.0
4,235,412 + Rru_A3688 0.42 +1.8
4,235,413 - Rru_A3688 0.43 +1.1
4,235,413 - Rru_A3688 0.43 +1.9
4,235,413 - Rru_A3688 0.43 +1.0
4,235,901 - Rru_A3689 0.20 +0.8
4,235,901 - Rru_A3689 0.20 +1.4
4,235,901 - Rru_A3689 0.20 +0.0
4,235,901 - Rru_A3689 0.20 +0.0
4,236,023 + Rru_A3689 0.47 +1.1
4,236,023 + Rru_A3689 0.47 +1.2

Or see this region's nucleotide sequence