Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3659

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3658 and Rru_A3659 overlap by 4 nucleotidesRru_A3659 and Rru_A3660 overlap by 4 nucleotides Rru_A3658: Rru_A3658 - Glycosyl transferase, group 1 (NCBI), at 4,199,096 to 4,200,256 _A3658 Rru_A3659: Rru_A3659 - hypothetical protein (NCBI), at 4,200,253 to 4,201,857 _A3659 Rru_A3660: Rru_A3660 - tRNA and rRNA cytosine-C5-methylase (NCBI), at 4,201,854 to 4,203,170 _A3660 Position (kb) 4200 4201 4202Strain fitness (log2 ratio) -1 0 1at 4199.863 kb on - strand, within Rru_A3658at 4200.562 kb on - strand, within Rru_A3659at 4200.635 kb on + strand, within Rru_A3659at 4200.635 kb on + strand, within Rru_A3659at 4200.891 kb on - strand, within Rru_A3659at 4200.891 kb on - strand, within Rru_A3659at 4200.891 kb on - strand, within Rru_A3659at 4200.891 kb on - strand, within Rru_A3659at 4200.891 kb on - strand, within Rru_A3659at 4201.112 kb on + strand, within Rru_A3659at 4201.278 kb on - strand, within Rru_A3659at 4201.278 kb on - strand, within Rru_A3659at 4201.278 kb on - strand, within Rru_A3659at 4201.278 kb on - strand, within Rru_A3659at 4201.278 kb on - strand, within Rru_A3659at 4201.278 kb on - strand, within Rru_A3659at 4201.284 kb on - strand, within Rru_A3659at 4201.284 kb on - strand, within Rru_A3659at 4201.284 kb on - strand, within Rru_A3659at 4201.284 kb on - strand, within Rru_A3659at 4201.329 kb on - strand, within Rru_A3659at 4201.408 kb on - strand, within Rru_A3659at 4201.644 kb on - strand, within Rru_A3659at 4201.743 kb on - strandat 4201.743 kb on - strandat 4201.743 kb on - strandat 4201.743 kb on - strandat 4202.106 kb on + strand, within Rru_A3660at 4202.106 kb on + strand, within Rru_A3660at 4202.106 kb on + strand, within Rru_A3660at 4202.268 kb on - strand, within Rru_A3660at 4202.705 kb on - strand, within Rru_A3660at 4202.828 kb on - strand, within Rru_A3660at 4202.828 kb on - strand, within Rru_A3660

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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4,199,863 - Rru_A3658 0.66 +0.0
4,200,562 - Rru_A3659 0.19 +0.0
4,200,635 + Rru_A3659 0.24 +0.4
4,200,635 + Rru_A3659 0.24 +0.3
4,200,891 - Rru_A3659 0.40 +0.0
4,200,891 - Rru_A3659 0.40 +0.0
4,200,891 - Rru_A3659 0.40 +0.8
4,200,891 - Rru_A3659 0.40 +0.0
4,200,891 - Rru_A3659 0.40 +0.0
4,201,112 + Rru_A3659 0.54 +0.0
4,201,278 - Rru_A3659 0.64 +0.0
4,201,278 - Rru_A3659 0.64 -1.0
4,201,278 - Rru_A3659 0.64 +1.0
4,201,278 - Rru_A3659 0.64 -1.0
4,201,278 - Rru_A3659 0.64 -1.0
4,201,278 - Rru_A3659 0.64 +0.0
4,201,284 - Rru_A3659 0.64 +0.0
4,201,284 - Rru_A3659 0.64 +0.0
4,201,284 - Rru_A3659 0.64 +0.0
4,201,284 - Rru_A3659 0.64 -0.9
4,201,329 - Rru_A3659 0.67 +0.3
4,201,408 - Rru_A3659 0.72 -0.4
4,201,644 - Rru_A3659 0.87 +0.0
4,201,743 - +0.9
4,201,743 - +1.3
4,201,743 - +0.0
4,201,743 - +1.4
4,202,106 + Rru_A3660 0.19 +0.4
4,202,106 + Rru_A3660 0.19 +1.5
4,202,106 + Rru_A3660 0.19 +0.0
4,202,268 - Rru_A3660 0.31 +0.0
4,202,705 - Rru_A3660 0.65 -1.0
4,202,828 - Rru_A3660 0.74 +0.0
4,202,828 - Rru_A3660 0.74 +0.0

Or see this region's nucleotide sequence