Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3632 and Rru_A3633 are separated by 51 nucleotides Rru_A3633 and Rru_A3634 are separated by 71 nucleotides Rru_A3634 and Rru_A3635 overlap by 4 nucleotides Rru_A3635 and Rru_A3636 are separated by 25 nucleotides
Rru_A3632: Rru_A3632 - hypothetical protein (NCBI), at 4,173,715 to 4,174,320
_A3632
Rru_A3633: Rru_A3633 - Thiamine monophosphate synthase (NCBI), at 4,174,372 to 4,175,190
_A3633
Rru_A3634: Rru_A3634 - Protein of unknown function UPF0001 (NCBI), at 4,175,262 to 4,175,990
_A3634
Rru_A3635: Rru_A3635 - hypothetical protein (NCBI), at 4,175,987 to 4,176,490
_A3635
Rru_A3636: Rru_A3636 - hypothetical protein (NCBI), at 4,176,516 to 4,177,910
_A3636
Position (kb) 4175
4176 Strain fitness (log2 ratio) -1
0
1
2 at 4174.397 kb on - strand at 4175.098 kb on + strand, within Rru_A3633 at 4175.099 kb on - strand, within Rru_A3633 at 4175.099 kb on - strand, within Rru_A3633 at 4175.137 kb on + strand at 4175.137 kb on + strand at 4175.154 kb on + strand at 4175.154 kb on + strand at 4175.166 kb on + strand at 4175.684 kb on + strand, within Rru_A3634 at 4176.149 kb on - strand, within Rru_A3635 at 4176.239 kb on - strand, within Rru_A3635 at 4176.239 kb on - strand, within Rru_A3635 at 4176.240 kb on + strand, within Rru_A3635 at 4176.241 kb on - strand, within Rru_A3635 at 4176.514 kb on + strand at 4176.515 kb on - strand at 4176.515 kb on - strand at 4176.568 kb on + strand at 4176.828 kb on - strand, within Rru_A3636 at 4176.828 kb on - strand, within Rru_A3636 at 4176.828 kb on - strand, within Rru_A3636 at 4176.967 kb on + strand, within Rru_A3636 at 4176.967 kb on + strand, within Rru_A3636
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 4,174,397 - +0.9 4,175,098 + Rru_A3633 0.89 +1.2 4,175,099 - Rru_A3633 0.89 +0.8 4,175,099 - Rru_A3633 0.89 +2.3 4,175,137 + +1.0 4,175,137 + +0.0 4,175,154 + +0.0 4,175,154 + +1.3 4,175,166 + +0.0 4,175,684 + Rru_A3634 0.58 +1.6 4,176,149 - Rru_A3635 0.32 +1.9 4,176,239 - Rru_A3635 0.50 +0.0 4,176,239 - Rru_A3635 0.50 +0.9 4,176,240 + Rru_A3635 0.50 +0.0 4,176,241 - Rru_A3635 0.50 +1.4 4,176,514 + +1.1 4,176,515 - +0.0 4,176,515 - +0.0 4,176,568 + +1.1 4,176,828 - Rru_A3636 0.22 +0.0 4,176,828 - Rru_A3636 0.22 +0.0 4,176,828 - Rru_A3636 0.22 +0.0 4,176,967 + Rru_A3636 0.32 -0.2 4,176,967 + Rru_A3636 0.32 -0.3
Or see this region's nucleotide sequence