Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3625 and Rru_A3626 are separated by 63 nucleotides Rru_A3626 and Rru_A3627 overlap by 8 nucleotides Rru_A3627 and Rru_A3628 overlap by 4 nucleotides
Rru_A3625: Rru_A3625 - Glucose-inhibited division protein A subfamily (NCBI), at 4,164,772 to 4,166,661
_A3625
Rru_A3626: Rru_A3626 - Glucose inhibited division protein (NCBI), at 4,166,725 to 4,167,330
_A3626
Rru_A3627: Rru_A3627 - Cobyrinic acid a,c-diamide synthase (NCBI), at 4,167,323 to 4,168,153
_A3627
Rru_A3628: Rru_A3628 - ParB-like partition protein (NCBI), at 4,168,150 to 4,169,130
_A3628
Position (kb) 4166
4167
4168 Strain fitness (log2 ratio) -1
0
1
2
3 at 4166.000 kb on - strand, within Rru_A3625 at 4166.791 kb on + strand, within Rru_A3626 at 4166.792 kb on - strand, within Rru_A3626 at 4167.072 kb on + strand, within Rru_A3626 at 4167.073 kb on - strand, within Rru_A3626 at 4167.297 kb on + strand at 4167.297 kb on + strand at 4167.298 kb on - strand at 4167.298 kb on - strand at 4167.298 kb on - strand at 4167.298 kb on - strand at 4167.298 kb on - strand at 4167.317 kb on + strand at 4167.317 kb on + strand at 4167.317 kb on + strand at 4167.557 kb on + strand, within Rru_A3627 at 4167.557 kb on + strand, within Rru_A3627 at 4167.557 kb on + strand, within Rru_A3627 at 4167.557 kb on + strand, within Rru_A3627 at 4167.557 kb on + strand, within Rru_A3627 at 4167.558 kb on - strand, within Rru_A3627 at 4167.558 kb on - strand, within Rru_A3627 at 4167.558 kb on - strand, within Rru_A3627 at 4167.562 kb on + strand, within Rru_A3627 at 4167.563 kb on - strand, within Rru_A3627 at 4167.737 kb on + strand, within Rru_A3627 at 4167.738 kb on - strand, within Rru_A3627 at 4167.738 kb on - strand, within Rru_A3627 at 4167.984 kb on - strand, within Rru_A3627 at 4167.984 kb on - strand, within Rru_A3627 at 4168.001 kb on + strand, within Rru_A3627 at 4168.001 kb on + strand, within Rru_A3627 at 4168.002 kb on - strand, within Rru_A3627 at 4168.078 kb on + strand at 4168.078 kb on + strand at 4168.078 kb on + strand at 4168.078 kb on + strand at 4168.079 kb on - strand at 4168.100 kb on + strand at 4168.101 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 4,166,000 - Rru_A3625 0.65 +0.0 4,166,791 + Rru_A3626 0.11 +0.0 4,166,792 - Rru_A3626 0.11 -1.0 4,167,072 + Rru_A3626 0.57 +0.0 4,167,073 - Rru_A3626 0.57 +0.0 4,167,297 + +0.0 4,167,297 + +0.0 4,167,298 - +0.0 4,167,298 - +0.0 4,167,298 - +0.0 4,167,298 - +1.6 4,167,298 - +1.9 4,167,317 + +0.0 4,167,317 + +1.0 4,167,317 + +0.0 4,167,557 + Rru_A3627 0.28 +0.0 4,167,557 + Rru_A3627 0.28 -0.4 4,167,557 + Rru_A3627 0.28 +0.0 4,167,557 + Rru_A3627 0.28 +0.8 4,167,557 + Rru_A3627 0.28 +0.0 4,167,558 - Rru_A3627 0.28 +0.0 4,167,558 - Rru_A3627 0.28 -1.0 4,167,558 - Rru_A3627 0.28 +1.8 4,167,562 + Rru_A3627 0.29 +2.6 4,167,563 - Rru_A3627 0.29 +1.6 4,167,737 + Rru_A3627 0.50 +0.0 4,167,738 - Rru_A3627 0.50 +0.0 4,167,738 - Rru_A3627 0.50 +0.0 4,167,984 - Rru_A3627 0.80 -1.0 4,167,984 - Rru_A3627 0.80 +0.0 4,168,001 + Rru_A3627 0.82 +0.0 4,168,001 + Rru_A3627 0.82 +1.6 4,168,002 - Rru_A3627 0.82 -1.6 4,168,078 + -1.6 4,168,078 + +3.2 4,168,078 + +0.0 4,168,078 + +0.0 4,168,079 - +0.0 4,168,100 + +0.0 4,168,101 - +2.0
Or see this region's nucleotide sequence