Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3575

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3572 and Rru_A3573 are separated by 24 nucleotidesRru_A3573 and Rru_A3574 are separated by 3 nucleotidesRru_A3574 and Rru_A3575 are separated by 87 nucleotidesRru_A3575 and Rru_A3576 are separated by 150 nucleotides Rru_A3572: Rru_A3572 - YCII-related (NCBI), at 4,117,341 to 4,117,631 _A3572 Rru_A3573: Rru_A3573 - Protein of unknown function DUF589 (NCBI), at 4,117,656 to 4,118,063 _A3573 Rru_A3574: Rru_A3574 - Rieske (2Fe-2S) region (NCBI), at 4,118,067 to 4,118,420 _A3574 Rru_A3575: Rru_A3575 - Acetate--CoA ligase (NCBI), at 4,118,508 to 4,120,448 _A3575 Rru_A3576: Rru_A3576 - UDP-glucuronate 5'-epimerase (NCBI), at 4,120,599 to 4,121,606 _A3576 Position (kb) 4118 4119 4120 4121Strain fitness (log2 ratio) -2 -1 0 1 2at 4117.557 kb on + strand, within Rru_A3572at 4117.557 kb on + strand, within Rru_A3572at 4117.558 kb on - strand, within Rru_A3572at 4117.599 kb on + strand, within Rru_A3572at 4117.599 kb on + strand, within Rru_A3572at 4117.599 kb on + strand, within Rru_A3572at 4117.600 kb on - strand, within Rru_A3572at 4117.600 kb on - strand, within Rru_A3572at 4117.601 kb on + strand, within Rru_A3572at 4117.601 kb on + strand, within Rru_A3572at 4117.641 kb on + strandat 4117.641 kb on + strandat 4117.641 kb on + strandat 4117.642 kb on - strandat 4117.642 kb on - strandat 4117.642 kb on - strandat 4117.857 kb on + strand, within Rru_A3573at 4118.061 kb on + strandat 4118.061 kb on + strandat 4118.283 kb on + strand, within Rru_A3574at 4118.283 kb on + strand, within Rru_A3574at 4118.283 kb on + strand, within Rru_A3574at 4118.283 kb on + strand, within Rru_A3574at 4118.283 kb on + strand, within Rru_A3574at 4118.283 kb on + strand, within Rru_A3574at 4118.284 kb on - strand, within Rru_A3574at 4118.284 kb on - strand, within Rru_A3574at 4118.284 kb on - strand, within Rru_A3574at 4118.448 kb on - strandat 4118.448 kb on - strandat 4118.483 kb on + strandat 4118.484 kb on - strandat 4118.484 kb on - strandat 4118.505 kb on + strandat 4118.505 kb on + strandat 4118.505 kb on + strandat 4118.506 kb on - strandat 4118.506 kb on - strandat 4118.506 kb on - strandat 4118.506 kb on - strandat 4118.506 kb on - strandat 4118.577 kb on + strandat 4118.577 kb on + strandat 4118.578 kb on - strandat 4118.589 kb on + strandat 4118.590 kb on - strandat 4118.590 kb on - strandat 4118.590 kb on - strandat 4118.835 kb on + strand, within Rru_A3575at 4118.919 kb on + strand, within Rru_A3575at 4118.919 kb on + strand, within Rru_A3575at 4118.919 kb on + strand, within Rru_A3575at 4118.920 kb on - strand, within Rru_A3575at 4118.920 kb on - strand, within Rru_A3575at 4118.920 kb on - strand, within Rru_A3575at 4119.289 kb on - strand, within Rru_A3575at 4119.289 kb on - strand, within Rru_A3575at 4119.329 kb on + strand, within Rru_A3575at 4119.329 kb on + strand, within Rru_A3575at 4119.329 kb on + strand, within Rru_A3575at 4119.329 kb on + strand, within Rru_A3575at 4119.330 kb on - strand, within Rru_A3575at 4119.351 kb on + strand, within Rru_A3575at 4119.352 kb on - strand, within Rru_A3575at 4119.352 kb on - strand, within Rru_A3575at 4119.352 kb on - strand, within Rru_A3575at 4119.352 kb on - strand, within Rru_A3575at 4119.372 kb on + strand, within Rru_A3575at 4119.372 kb on + strand, within Rru_A3575at 4119.372 kb on + strand, within Rru_A3575at 4119.372 kb on + strand, within Rru_A3575at 4119.373 kb on - strand, within Rru_A3575at 4119.373 kb on - strand, within Rru_A3575at 4119.373 kb on - strand, within Rru_A3575at 4119.384 kb on + strand, within Rru_A3575at 4119.402 kb on + strand, within Rru_A3575at 4119.402 kb on + strand, within Rru_A3575at 4119.444 kb on + strand, within Rru_A3575at 4119.444 kb on + strand, within Rru_A3575at 4119.444 kb on + strand, within Rru_A3575at 4119.444 kb on + strand, within Rru_A3575at 4119.444 kb on + strand, within Rru_A3575at 4119.444 kb on + strand, within Rru_A3575at 4119.444 kb on + strand, within Rru_A3575at 4119.445 kb on - strand, within Rru_A3575at 4119.445 kb on - strand, within Rru_A3575at 4119.564 kb on + strand, within Rru_A3575at 4119.564 kb on + strand, within Rru_A3575at 4119.564 kb on + strand, within Rru_A3575at 4119.564 kb on + strand, within Rru_A3575at 4119.565 kb on - strand, within Rru_A3575at 4119.693 kb on + strand, within Rru_A3575at 4119.734 kb on + strand, within Rru_A3575at 4119.933 kb on + strand, within Rru_A3575at 4119.963 kb on + strand, within Rru_A3575at 4119.963 kb on + strand, within Rru_A3575at 4119.964 kb on - strand, within Rru_A3575at 4119.964 kb on - strand, within Rru_A3575at 4119.964 kb on - strand, within Rru_A3575at 4119.964 kb on - strand, within Rru_A3575at 4119.964 kb on - strand, within Rru_A3575at 4119.975 kb on + strand, within Rru_A3575at 4119.975 kb on + strand, within Rru_A3575at 4119.975 kb on + strand, within Rru_A3575at 4119.976 kb on - strand, within Rru_A3575at 4119.976 kb on - strand, within Rru_A3575at 4119.976 kb on - strand, within Rru_A3575at 4119.976 kb on - strand, within Rru_A3575at 4119.976 kb on - strand, within Rru_A3575at 4119.976 kb on - strand, within Rru_A3575at 4119.976 kb on - strand, within Rru_A3575at 4119.984 kb on + strand, within Rru_A3575at 4119.984 kb on + strand, within Rru_A3575at 4119.987 kb on + strand, within Rru_A3575at 4119.987 kb on + strand, within Rru_A3575at 4119.987 kb on + strand, within Rru_A3575at 4119.987 kb on + strand, within Rru_A3575at 4119.987 kb on + strand, within Rru_A3575at 4119.988 kb on - strand, within Rru_A3575at 4120.026 kb on + strand, within Rru_A3575at 4120.179 kb on + strand, within Rru_A3575at 4120.179 kb on + strand, within Rru_A3575at 4120.179 kb on + strand, within Rru_A3575at 4120.179 kb on + strand, within Rru_A3575at 4120.179 kb on + strand, within Rru_A3575at 4120.179 kb on + strand, within Rru_A3575at 4120.179 kb on + strand, within Rru_A3575at 4120.179 kb on + strand, within Rru_A3575at 4120.179 kb on + strand, within Rru_A3575at 4120.179 kb on + strand, within Rru_A3575at 4120.179 kb on + strand, within Rru_A3575at 4120.180 kb on - strand, within Rru_A3575at 4120.180 kb on - strand, within Rru_A3575at 4120.180 kb on - strand, within Rru_A3575at 4120.180 kb on - strand, within Rru_A3575at 4120.180 kb on - strand, within Rru_A3575at 4120.180 kb on - strand, within Rru_A3575at 4120.185 kb on + strand, within Rru_A3575at 4120.185 kb on + strand, within Rru_A3575at 4120.185 kb on + strand, within Rru_A3575at 4120.185 kb on + strand, within Rru_A3575at 4120.185 kb on + strand, within Rru_A3575at 4120.284 kb on - strandat 4120.385 kb on + strandat 4120.386 kb on - strandat 4120.446 kb on + strandat 4120.447 kb on - strandat 4120.447 kb on - strandat 4120.541 kb on + strandat 4120.541 kb on + strandat 4120.541 kb on + strandat 4120.543 kb on + strandat 4120.543 kb on + strandat 4120.543 kb on + strandat 4120.543 kb on + strandat 4120.543 kb on + strandat 4120.543 kb on + strandat 4120.543 kb on + strandat 4120.543 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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4,117,557 + Rru_A3572 0.74 +2.6
4,117,557 + Rru_A3572 0.74 +1.1
4,117,558 - Rru_A3572 0.75 -0.0
4,117,599 + Rru_A3572 0.89 -0.0
4,117,599 + Rru_A3572 0.89 +0.8
4,117,599 + Rru_A3572 0.89 -0.0
4,117,600 - Rru_A3572 0.89 -0.0
4,117,600 - Rru_A3572 0.89 +1.0
4,117,601 + Rru_A3572 0.89 -1.6
4,117,601 + Rru_A3572 0.89 -1.0
4,117,641 + +1.1
4,117,641 + +0.8
4,117,641 + -0.0
4,117,642 - +0.3
4,117,642 - +1.1
4,117,642 - +1.0
4,117,857 + Rru_A3573 0.49 -0.0
4,118,061 + -0.0
4,118,061 + +0.9
4,118,283 + Rru_A3574 0.61 -0.0
4,118,283 + Rru_A3574 0.61 -0.0
4,118,283 + Rru_A3574 0.61 +0.3
4,118,283 + Rru_A3574 0.61 -0.3
4,118,283 + Rru_A3574 0.61 -0.0
4,118,283 + Rru_A3574 0.61 -0.0
4,118,284 - Rru_A3574 0.61 -0.0
4,118,284 - Rru_A3574 0.61 +1.5
4,118,284 - Rru_A3574 0.61 +0.8
4,118,448 - +0.9
4,118,448 - -0.0
4,118,483 + -0.2
4,118,484 - +1.2
4,118,484 - -1.0
4,118,505 + -0.0
4,118,505 + -1.0
4,118,505 + +0.3
4,118,506 - +0.3
4,118,506 - +0.7
4,118,506 - -1.0
4,118,506 - -0.0
4,118,506 - -0.0
4,118,577 + -0.0
4,118,577 + +0.5
4,118,578 - -1.0
4,118,589 + +0.4
4,118,590 - -0.0
4,118,590 - +0.2
4,118,590 - +0.0
4,118,835 + Rru_A3575 0.17 +0.6
4,118,919 + Rru_A3575 0.21 +0.3
4,118,919 + Rru_A3575 0.21 -0.0
4,118,919 + Rru_A3575 0.21 +0.4
4,118,920 - Rru_A3575 0.21 -0.3
4,118,920 - Rru_A3575 0.21 +0.1
4,118,920 - Rru_A3575 0.21 -0.0
4,119,289 - Rru_A3575 0.40 -0.9
4,119,289 - Rru_A3575 0.40 -0.0
4,119,329 + Rru_A3575 0.42 -0.1
4,119,329 + Rru_A3575 0.42 +0.4
4,119,329 + Rru_A3575 0.42 -0.0
4,119,329 + Rru_A3575 0.42 +0.0
4,119,330 - Rru_A3575 0.42 +0.6
4,119,351 + Rru_A3575 0.43 -0.0
4,119,352 - Rru_A3575 0.43 +0.3
4,119,352 - Rru_A3575 0.43 -0.2
4,119,352 - Rru_A3575 0.43 +0.4
4,119,352 - Rru_A3575 0.43 -1.2
4,119,372 + Rru_A3575 0.45 +0.5
4,119,372 + Rru_A3575 0.45 -1.0
4,119,372 + Rru_A3575 0.45 +0.4
4,119,372 + Rru_A3575 0.45 -2.5
4,119,373 - Rru_A3575 0.45 +2.0
4,119,373 - Rru_A3575 0.45 +0.7
4,119,373 - Rru_A3575 0.45 +0.1
4,119,384 + Rru_A3575 0.45 +2.3
4,119,402 + Rru_A3575 0.46 +0.5
4,119,402 + Rru_A3575 0.46 -0.8
4,119,444 + Rru_A3575 0.48 -0.2
4,119,444 + Rru_A3575 0.48 +2.1
4,119,444 + Rru_A3575 0.48 +0.2
4,119,444 + Rru_A3575 0.48 -0.0
4,119,444 + Rru_A3575 0.48 -0.2
4,119,444 + Rru_A3575 0.48 -0.1
4,119,444 + Rru_A3575 0.48 +1.4
4,119,445 - Rru_A3575 0.48 -0.0
4,119,445 - Rru_A3575 0.48 -0.7
4,119,564 + Rru_A3575 0.54 -0.0
4,119,564 + Rru_A3575 0.54 -0.0
4,119,564 + Rru_A3575 0.54 -1.6
4,119,564 + Rru_A3575 0.54 -0.0
4,119,565 - Rru_A3575 0.54 +0.3
4,119,693 + Rru_A3575 0.61 -0.0
4,119,734 + Rru_A3575 0.63 +0.7
4,119,933 + Rru_A3575 0.73 +0.1
4,119,963 + Rru_A3575 0.75 +1.0
4,119,963 + Rru_A3575 0.75 -0.0
4,119,964 - Rru_A3575 0.75 -0.1
4,119,964 - Rru_A3575 0.75 +0.6
4,119,964 - Rru_A3575 0.75 -0.3
4,119,964 - Rru_A3575 0.75 +0.1
4,119,964 - Rru_A3575 0.75 -0.0
4,119,975 + Rru_A3575 0.76 -0.0
4,119,975 + Rru_A3575 0.76 -1.0
4,119,975 + Rru_A3575 0.76 +0.6
4,119,976 - Rru_A3575 0.76 +0.8
4,119,976 - Rru_A3575 0.76 -0.5
4,119,976 - Rru_A3575 0.76 +0.5
4,119,976 - Rru_A3575 0.76 +1.4
4,119,976 - Rru_A3575 0.76 +0.4
4,119,976 - Rru_A3575 0.76 -1.0
4,119,976 - Rru_A3575 0.76 -0.0
4,119,984 + Rru_A3575 0.76 -0.0
4,119,984 + Rru_A3575 0.76 -0.0
4,119,987 + Rru_A3575 0.76 +1.7
4,119,987 + Rru_A3575 0.76 -0.1
4,119,987 + Rru_A3575 0.76 +0.3
4,119,987 + Rru_A3575 0.76 +1.0
4,119,987 + Rru_A3575 0.76 +0.3
4,119,988 - Rru_A3575 0.76 +0.3
4,120,026 + Rru_A3575 0.78 +0.1
4,120,179 + Rru_A3575 0.86 -0.0
4,120,179 + Rru_A3575 0.86 -1.0
4,120,179 + Rru_A3575 0.86 -0.1
4,120,179 + Rru_A3575 0.86 +0.2
4,120,179 + Rru_A3575 0.86 -0.0
4,120,179 + Rru_A3575 0.86 +0.4
4,120,179 + Rru_A3575 0.86 +0.0
4,120,179 + Rru_A3575 0.86 -0.0
4,120,179 + Rru_A3575 0.86 -0.4
4,120,179 + Rru_A3575 0.86 +0.0
4,120,179 + Rru_A3575 0.86 -0.0
4,120,180 - Rru_A3575 0.86 -0.0
4,120,180 - Rru_A3575 0.86 +0.4
4,120,180 - Rru_A3575 0.86 +1.3
4,120,180 - Rru_A3575 0.86 +1.6
4,120,180 - Rru_A3575 0.86 -0.7
4,120,180 - Rru_A3575 0.86 -0.0
4,120,185 + Rru_A3575 0.86 -0.2
4,120,185 + Rru_A3575 0.86 -0.0
4,120,185 + Rru_A3575 0.86 -1.6
4,120,185 + Rru_A3575 0.86 -2.0
4,120,185 + Rru_A3575 0.86 +0.2
4,120,284 - +0.0
4,120,385 + -1.0
4,120,386 - +0.1
4,120,446 + +0.9
4,120,447 - -0.0
4,120,447 - +0.8
4,120,541 + -0.0
4,120,541 + +1.0
4,120,541 + -1.0
4,120,543 + +1.1
4,120,543 + -0.0
4,120,543 + +1.6
4,120,543 + +1.4
4,120,543 + +0.9
4,120,543 + -0.0
4,120,543 + +1.0
4,120,543 + -0.0

Or see this region's nucleotide sequence