Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3568

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3567 and Rru_A3568 are separated by 34 nucleotidesRru_A3568 and Rru_A3569 are separated by 154 nucleotides Rru_A3567: Rru_A3567 - Uroporphyrinogen III synthase HEM4 (NCBI), at 4,111,106 to 4,113,310 _A3567 Rru_A3568: Rru_A3568 - Porphobilinogen deaminase (NCBI), at 4,113,345 to 4,114,310 _A3568 Rru_A3569: Rru_A3569 - O-sialoglycoprotein endopeptidase (NCBI), at 4,114,465 to 4,115,454 _A3569 Position (kb) 4113 4114 4115Strain fitness (log2 ratio) -2 -1 0 1 2at 4113.299 kb on - strandat 4114.322 kb on + strandat 4114.322 kb on + strandat 4114.322 kb on + strandat 4114.322 kb on + strandat 4114.322 kb on + strandat 4114.357 kb on + strandat 4114.357 kb on + strandat 4114.357 kb on + strandat 4114.357 kb on + strandat 4114.358 kb on - strandat 4114.358 kb on - strandat 4114.358 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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4,113,299 - -2.6
4,114,322 + -0.0
4,114,322 + -2.6
4,114,322 + -1.0
4,114,322 + -0.0
4,114,322 + -0.0
4,114,357 + +2.2
4,114,357 + -2.0
4,114,357 + +2.4
4,114,357 + +2.4
4,114,358 - +1.4
4,114,358 - +0.4
4,114,358 - +0.9

Or see this region's nucleotide sequence