Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3564 and Rru_A3565 are separated by 102 nucleotides Rru_A3565 and Rru_A3566 are separated by 95 nucleotides Rru_A3566 and Rru_A3567 are separated by 4 nucleotides
Rru_A3564: Rru_A3564 - Histidinol-phosphate phosphatase (NCBI), at 4,108,262 to 4,108,843
_A3564
Rru_A3565: Rru_A3565 - Rhomboid-like protein (NCBI), at 4,108,946 to 4,109,704
_A3565
Rru_A3566: Rru_A3566 - HemY-like (NCBI), at 4,109,800 to 4,111,101
_A3566
Rru_A3567: Rru_A3567 - Uroporphyrinogen III synthase HEM4 (NCBI), at 4,111,106 to 4,113,310
_A3567
Position (kb)
4109
4110
4111
4112 Strain fitness (log2 ratio)
-1
0
1
2 at 4108.841 kb on + strand at 4108.841 kb on + strand at 4108.874 kb on + strand at 4108.874 kb on + strand at 4108.875 kb on - strand at 4108.875 kb on - strand at 4108.875 kb on - strand at 4108.875 kb on - strand at 4108.875 kb on - strand at 4108.875 kb on - strand at 4109.102 kb on - strand, within Rru_A3565 at 4109.263 kb on + strand, within Rru_A3565 at 4109.263 kb on + strand, within Rru_A3565 at 4109.263 kb on + strand, within Rru_A3565 at 4109.263 kb on + strand, within Rru_A3565 at 4109.264 kb on - strand, within Rru_A3565 at 4109.265 kb on + strand, within Rru_A3565 at 4109.265 kb on + strand, within Rru_A3565 at 4109.265 kb on + strand, within Rru_A3565 at 4109.265 kb on + strand, within Rru_A3565 at 4109.266 kb on - strand, within Rru_A3565 at 4109.266 kb on - strand, within Rru_A3565 at 4109.266 kb on - strand, within Rru_A3565 at 4109.266 kb on - strand, within Rru_A3565 at 4109.266 kb on - strand, within Rru_A3565 at 4109.266 kb on - strand, within Rru_A3565 at 4109.266 kb on - strand, within Rru_A3565 at 4109.373 kb on + strand, within Rru_A3565 at 4109.374 kb on - strand, within Rru_A3565 at 4109.374 kb on - strand, within Rru_A3565 at 4109.416 kb on + strand, within Rru_A3565 at 4109.617 kb on - strand, within Rru_A3565 at 4109.617 kb on - strand, within Rru_A3565 at 4109.636 kb on + strand at 4109.636 kb on + strand at 4109.636 kb on + strand at 4109.636 kb on + strand at 4109.637 kb on - strand at 4110.200 kb on + strand, within Rru_A3566 at 4110.201 kb on - strand, within Rru_A3566 at 4110.588 kb on - strand, within Rru_A3566 at 4111.430 kb on - strand, within Rru_A3567
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 4,108,841 + -0.0 4,108,841 + -0.0 4,108,874 + +0.8 4,108,874 + -0.0 4,108,875 - +0.8 4,108,875 - -0.0 4,108,875 - -0.0 4,108,875 - +0.4 4,108,875 - +0.8 4,108,875 - -0.0 4,109,102 - Rru_A3565 0.21 -0.0 4,109,263 + Rru_A3565 0.42 +1.1 4,109,263 + Rru_A3565 0.42 +1.4 4,109,263 + Rru_A3565 0.42 -0.0 4,109,263 + Rru_A3565 0.42 +1.0 4,109,264 - Rru_A3565 0.42 -0.0 4,109,265 + Rru_A3565 0.42 +2.1 4,109,265 + Rru_A3565 0.42 +1.2 4,109,265 + Rru_A3565 0.42 -0.0 4,109,265 + Rru_A3565 0.42 -0.1 4,109,266 - Rru_A3565 0.42 -0.0 4,109,266 - Rru_A3565 0.42 +0.6 4,109,266 - Rru_A3565 0.42 +1.3 4,109,266 - Rru_A3565 0.42 -0.0 4,109,266 - Rru_A3565 0.42 +0.9 4,109,266 - Rru_A3565 0.42 -0.0 4,109,266 - Rru_A3565 0.42 +1.1 4,109,373 + Rru_A3565 0.56 +0.7 4,109,374 - Rru_A3565 0.56 +1.0 4,109,374 - Rru_A3565 0.56 -0.0 4,109,416 + Rru_A3565 0.62 +2.0 4,109,617 - Rru_A3565 0.88 -1.0 4,109,617 - Rru_A3565 0.88 -0.0 4,109,636 + +1.2 4,109,636 + -0.0 4,109,636 + -0.0 4,109,636 + +0.7 4,109,637 - -0.0 4,110,200 + Rru_A3566 0.31 +0.4 4,110,201 - Rru_A3566 0.31 -0.0 4,110,588 - Rru_A3566 0.61 -0.0 4,111,430 - Rru_A3567 0.15 -0.0
Or see this region's nucleotide sequence