Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3548

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
4,085,419	-		Rru_A3546	0.90	+0.7
4,085,419	-		Rru_A3546	0.90	+1.2
4,085,612	-				-0.0
4,085,641	-				-0.0
4,085,641	-				+1.3
4,085,672	+				+0.8
4,085,672	+				-0.0
4,085,672	+				+1.2
4,085,672	+				-2.0
4,085,672	+				-1.6
4,085,672	+				+0.5
4,085,672	+				+1.1
4,085,673	-				-0.0
4,085,673	-				+0.9
4,085,673	-				+1.0
4,085,673	-				+1.2
4,085,774	+		Rru_A3547	0.13	-0.0
4,085,774	+		Rru_A3547	0.13	-0.0
4,085,775	-		Rru_A3547	0.13	-0.0
4,085,775	-		Rru_A3547	0.13	-1.0
4,085,862	+		Rru_A3547	0.38	-0.0
4,085,889	+		Rru_A3547	0.46	-0.0
4,085,889	+		Rru_A3547	0.46	-0.0
4,085,892	-		Rru_A3547	0.47	-0.0
4,085,924	+		Rru_A3547	0.56	-0.0
4,085,924	+		Rru_A3547	0.56	-0.0
4,085,924	+		Rru_A3547	0.56	-0.0
4,085,925	-		Rru_A3547	0.56	+0.7
4,085,925	-		Rru_A3547	0.56	-0.0
4,085,953	-		Rru_A3547	0.64	-1.0
4,085,957	-		Rru_A3547	0.65	-0.0
4,085,957	-		Rru_A3547	0.65	-0.0
4,086,075	+				+1.5
4,086,076	-				+0.6
4,086,295	+				+0.3
4,086,295	+				-0.2
4,086,296	-				-0.0
4,086,296	-				-0.0
4,086,296	-				-0.0
4,086,302	-				-0.0
4,086,323	+				-1.9
4,086,323	+				-0.0
4,086,323	+				-1.0
4,086,323	+				-2.4
4,086,323	+				-0.0
4,086,323	+				-0.0
4,086,324	-				-0.0
4,086,407	+				-0.0
4,086,527	+		Rru_A3548	0.14	-0.0
4,086,527	+		Rru_A3548	0.14	-0.0
4,086,528	-		Rru_A3548	0.14	-1.3
4,086,528	-		Rru_A3548	0.14	-1.4
4,086,588	+		Rru_A3548	0.18	-1.3
4,086,589	-		Rru_A3548	0.18	-2.3
4,086,752	+		Rru_A3548	0.28	-0.0
4,086,851	+		Rru_A3548	0.35	-2.3
4,086,851	+		Rru_A3548	0.35	-0.0
4,086,851	+		Rru_A3548	0.35	-0.0
4,086,852	-		Rru_A3548	0.35	+1.0
4,086,852	-		Rru_A3548	0.35	-0.0
4,086,852	-		Rru_A3548	0.35	-0.0
4,086,852	-		Rru_A3548	0.35	-0.0
4,086,852	-		Rru_A3548	0.35	-1.6
4,086,852	-		Rru_A3548	0.35	-1.6
4,086,852	-		Rru_A3548	0.35	-1.4
4,086,852	-		Rru_A3548	0.35	-2.0
4,086,857	+		Rru_A3548	0.35	-0.0
4,086,858	-		Rru_A3548	0.35	-1.3
4,086,858	-		Rru_A3548	0.35	-1.6
4,086,858	-		Rru_A3548	0.35	-2.8
4,086,893	-		Rru_A3548	0.37	-1.0
4,087,173	-		Rru_A3548	0.55	-2.2
4,087,195	+		Rru_A3548	0.56	-1.8
4,087,195	+		Rru_A3548	0.56	-1.4
4,087,195	+		Rru_A3548	0.56	-2.4
4,087,196	-		Rru_A3548	0.56	-1.0
4,087,196	-		Rru_A3548	0.56	-1.9
4,087,196	-		Rru_A3548	0.56	-2.8
4,087,196	-		Rru_A3548	0.56	-2.6
4,087,370	+		Rru_A3548	0.67	-0.0
4,087,371	-		Rru_A3548	0.67	-1.0
4,087,491	-		Rru_A3548	0.74	-1.8
4,087,491	-		Rru_A3548	0.74	-0.0
4,087,566	-		Rru_A3548	0.79	-0.8
4,087,566	-		Rru_A3548	0.79	-3.7
4,087,577	+		Rru_A3548	0.80	-0.7
4,087,577	+		Rru_A3548	0.80	-0.0
4,087,577	+		Rru_A3548	0.80	-0.0
4,087,577	+		Rru_A3548	0.80	-0.0
4,087,577	+		Rru_A3548	0.80	-0.0
4,087,578	-		Rru_A3548	0.80	-1.7
4,087,579	+		Rru_A3548	0.80	-0.0
4,087,579	+		Rru_A3548	0.80	-0.0
4,087,634	+		Rru_A3548	0.83	-2.0
4,087,689	-		Rru_A3548	0.87	-1.6
4,087,901	+				-0.0
4,087,901	+				-0.0
4,087,901	+				+1.1
4,087,901	+				+0.1
4,087,901	+				-0.4
4,087,901	+				+0.5
4,087,901	+				-0.0
4,087,902	-				+0.5
4,087,902	-				+0.3
4,087,902	-				-0.0
4,087,902	-				-0.0
4,087,902	-				+1.5
4,088,209	+				-0.0
4,088,209	+				-0.0
4,088,209	+				-0.5
4,088,210	-				+1.0
4,088,210	-				-0.0
4,088,212	-				-0.0
4,088,370	+		Rru_A3549	0.19	-0.0
4,088,370	+		Rru_A3549	0.19	-1.5
4,088,370	+		Rru_A3549	0.19	-1.1
4,088,370	+		Rru_A3549	0.19	-0.0
4,088,371	-		Rru_A3549	0.19	-1.0
4,088,371	-		Rru_A3549	0.19	+1.5
4,088,461	+		Rru_A3549	0.25	-0.0
4,088,572	+		Rru_A3549	0.32	-1.7
4,088,572	+		Rru_A3549	0.32	-0.0
4,088,572	+		Rru_A3549	0.32	-1.2
4,088,573	-		Rru_A3549	0.32	-0.0
4,088,599	-		Rru_A3549	0.34	-1.6
4,088,730	+		Rru_A3549	0.42	-0.0
4,088,731	-		Rru_A3549	0.42	-1.0
4,088,731	-		Rru_A3549	0.42	-0.6