Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3457

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
3,980,662	+		Rru_A3456	0.12	+0.9
3,980,662	+		Rru_A3456	0.12	+1.2
3,980,662	+		Rru_A3456	0.12	+1.1
3,980,662	+		Rru_A3456	0.12	+0.7
3,980,686	+		Rru_A3456	0.15	+0.0
3,980,686	+		Rru_A3456	0.15	+1.4
3,980,686	+		Rru_A3456	0.15	+0.0
3,980,686	+		Rru_A3456	0.15	+0.0
3,980,686	+		Rru_A3456	0.15	+1.3
3,980,686	+		Rru_A3456	0.15	+2.0
3,980,687	-		Rru_A3456	0.15	+1.1
3,980,687	-		Rru_A3456	0.15	+0.6
3,980,687	-		Rru_A3456	0.15	-0.5
3,980,688	+		Rru_A3456	0.15	+1.4
3,980,688	+		Rru_A3456	0.15	+1.2
3,980,689	-		Rru_A3456	0.15	+0.0
3,980,689	-		Rru_A3456	0.15	+0.0
3,980,689	-		Rru_A3456	0.15	+0.0
3,980,689	-		Rru_A3456	0.15	+1.2
3,980,938	+		Rru_A3456	0.40	+1.4
3,980,938	+		Rru_A3456	0.40	+1.0
3,981,088	+		Rru_A3456	0.55	+0.0
3,981,089	-		Rru_A3456	0.55	+0.0
3,981,089	-		Rru_A3456	0.55	+1.1
3,981,089	-		Rru_A3456	0.55	+0.6
3,981,097	+		Rru_A3456	0.55	+1.1
3,981,152	-		Rru_A3456	0.61	+0.0
3,981,152	-		Rru_A3456	0.61	+0.6
3,981,275	-		Rru_A3456	0.73	+0.0
3,981,544	+				+1.2
3,981,545	-				+0.6
3,981,610	-				+1.2
3,981,630	+				+0.0
3,981,698	-				+0.9
3,981,700	+				+0.3
3,981,701	-				+1.4
3,981,788	-		Rru_A3457	0.11	-1.0
3,982,231	+		Rru_A3457	0.41	+0.9
3,982,231	+		Rru_A3457	0.41	+0.0
3,982,241	-		Rru_A3457	0.42	+0.6
3,982,241	-		Rru_A3457	0.42	+0.0
3,982,272	+		Rru_A3457	0.44	+0.0
3,982,273	-		Rru_A3457	0.44	+0.7
3,982,298	+		Rru_A3457	0.46	+1.5
3,982,299	-		Rru_A3457	0.46	+0.7
3,982,299	-		Rru_A3457	0.46	+0.5
3,982,599	-		Rru_A3457	0.66	+0.0
3,982,819	+		Rru_A3457	0.81	+0.0
3,982,819	+		Rru_A3457	0.81	+0.0
3,982,819	+		Rru_A3457	0.81	+0.0
3,982,820	-		Rru_A3457	0.81	+0.0
3,982,820	-		Rru_A3457	0.81	+0.0
3,982,908	+		Rru_A3457	0.87	+0.4
3,982,909	-		Rru_A3457	0.87	+0.0
3,983,072	-				+0.9
3,983,163	+		Rru_A3458	0.16	+0.9
3,983,163	+		Rru_A3458	0.16	+1.1
3,983,163	+		Rru_A3458	0.16	+1.3
3,983,175	+		Rru_A3458	0.18	+1.1
3,983,175	+		Rru_A3458	0.18	+0.0
3,983,176	-		Rru_A3458	0.18	-1.0
3,983,340	+		Rru_A3458	0.54	+1.4
3,983,340	+		Rru_A3458	0.54	+1.2
3,983,341	-		Rru_A3458	0.54	+0.0
3,983,341	-		Rru_A3458	0.54	+1.2
3,983,341	-		Rru_A3458	0.54	-1.0
3,983,341	-		Rru_A3458	0.54	+0.6
3,983,449	-		Rru_A3458	0.77	+1.7
3,983,490	+		Rru_A3458	0.86	+0.9
3,983,490	+		Rru_A3458	0.86	+0.0
3,983,490	+		Rru_A3458	0.86	+0.0
3,983,490	+		Rru_A3458	0.86	+1.6
3,983,491	-		Rru_A3458	0.87	+1.0
3,983,491	-		Rru_A3458	0.87	+1.3
3,983,527	-				+0.0
3,983,527	-				+0.0
3,983,631	+				+0.0
3,983,631	+				+0.0
3,983,632	-				-0.0
3,983,632	-				+0.0
3,983,943	-				-1.0
3,983,943	-				+0.0
3,983,956	+				+0.6
3,983,957	-				+1.4
3,984,013	+				+0.0
3,984,013	+				+0.0
3,984,013	+				+1.0
3,984,013	+				+0.9
3,984,013	+				+0.7
3,984,013	+				+0.0
3,984,013	+				+0.0
3,984,013	+				+0.8
3,984,013	+				+1.1
3,984,014	-				+2.4
3,984,014	-				+0.0
3,984,014	-				+1.4
3,984,014	-				+1.2
3,984,014	-				+0.9
3,984,014	-				+1.2
3,984,014	-				+1.6
3,984,014	-				+1.1
3,984,015	+				+0.0
3,984,015	+				+1.3
3,984,016	-				+0.0
3,984,016	-				+0.7