Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3436

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3435 and Rru_A3436 are separated by 64 nucleotidesRru_A3436 and Rru_A3437 are separated by 38 nucleotides Rru_A3435: Rru_A3435 - hypothetical protein (NCBI), at 3,955,832 to 3,958,888 _A3435 Rru_A3436: Rru_A3436 - Nucleotidyl transferase (NCBI), at 3,958,953 to 3,959,714 _A3436 Rru_A3437: Rru_A3437 - Aminoglycoside phosphotransferase (NCBI), at 3,959,753 to 3,960,835 _A3437 Position (kb) 3958 3959 3960Strain fitness (log2 ratio) -1 0 1at 3958.954 kb on + strandat 3958.954 kb on + strandat 3958.955 kb on - strandat 3958.955 kb on - strandat 3958.955 kb on - strandat 3958.955 kb on - strandat 3959.371 kb on + strand, within Rru_A3436at 3959.371 kb on + strand, within Rru_A3436at 3959.372 kb on - strand, within Rru_A3436at 3959.722 kb on + strandat 3959.723 kb on - strandat 3959.736 kb on + strandat 3959.893 kb on + strand, within Rru_A3437at 3959.894 kb on - strand, within Rru_A3437at 3960.034 kb on - strand, within Rru_A3437at 3960.061 kb on + strand, within Rru_A3437at 3960.061 kb on + strand, within Rru_A3437at 3960.061 kb on + strand, within Rru_A3437at 3960.061 kb on + strand, within Rru_A3437at 3960.061 kb on + strand, within Rru_A3437at 3960.062 kb on - strand, within Rru_A3437at 3960.062 kb on - strand, within Rru_A3437at 3960.062 kb on - strand, within Rru_A3437at 3960.071 kb on - strand, within Rru_A3437at 3960.108 kb on + strand, within Rru_A3437at 3960.108 kb on + strand, within Rru_A3437at 3960.108 kb on + strand, within Rru_A3437at 3960.108 kb on + strand, within Rru_A3437at 3960.109 kb on - strand, within Rru_A3437at 3960.109 kb on - strand, within Rru_A3437at 3960.109 kb on - strand, within Rru_A3437at 3960.109 kb on - strand, within Rru_A3437at 3960.109 kb on - strand, within Rru_A3437at 3960.373 kb on - strand, within Rru_A3437at 3960.450 kb on + strand, within Rru_A3437at 3960.451 kb on - strand, within Rru_A3437at 3960.451 kb on - strand, within Rru_A3437at 3960.451 kb on - strand, within Rru_A3437at 3960.492 kb on + strand, within Rru_A3437at 3960.492 kb on + strand, within Rru_A3437at 3960.492 kb on + strand, within Rru_A3437at 3960.492 kb on + strand, within Rru_A3437at 3960.492 kb on + strand, within Rru_A3437at 3960.492 kb on + strand, within Rru_A3437at 3960.492 kb on + strand, within Rru_A3437at 3960.493 kb on - strand, within Rru_A3437at 3960.493 kb on - strand, within Rru_A3437at 3960.493 kb on - strand, within Rru_A3437

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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3,958,954 + +0.8
3,958,954 + +0.0
3,958,955 - +0.0
3,958,955 - +1.2
3,958,955 - +0.0
3,958,955 - +1.2
3,959,371 + Rru_A3436 0.55 +0.0
3,959,371 + Rru_A3436 0.55 +0.0
3,959,372 - Rru_A3436 0.55 +0.0
3,959,722 + +0.5
3,959,723 - +1.1
3,959,736 + +0.6
3,959,893 + Rru_A3437 0.13 +0.5
3,959,894 - Rru_A3437 0.13 +0.0
3,960,034 - Rru_A3437 0.26 +0.0
3,960,061 + Rru_A3437 0.28 +0.0
3,960,061 + Rru_A3437 0.28 +0.8
3,960,061 + Rru_A3437 0.28 +0.0
3,960,061 + Rru_A3437 0.28 -0.6
3,960,061 + Rru_A3437 0.28 +0.0
3,960,062 - Rru_A3437 0.29 +0.0
3,960,062 - Rru_A3437 0.29 +1.5
3,960,062 - Rru_A3437 0.29 +0.0
3,960,071 - Rru_A3437 0.29 +0.0
3,960,108 + Rru_A3437 0.33 +0.0
3,960,108 + Rru_A3437 0.33 +1.1
3,960,108 + Rru_A3437 0.33 +0.0
3,960,108 + Rru_A3437 0.33 +0.0
3,960,109 - Rru_A3437 0.33 -1.0
3,960,109 - Rru_A3437 0.33 +0.9
3,960,109 - Rru_A3437 0.33 +0.0
3,960,109 - Rru_A3437 0.33 -1.0
3,960,109 - Rru_A3437 0.33 +0.0
3,960,373 - Rru_A3437 0.57 +0.0
3,960,450 + Rru_A3437 0.64 +0.6
3,960,451 - Rru_A3437 0.64 +0.0
3,960,451 - Rru_A3437 0.64 -0.6
3,960,451 - Rru_A3437 0.64 +0.7
3,960,492 + Rru_A3437 0.68 +0.0
3,960,492 + Rru_A3437 0.68 +0.8
3,960,492 + Rru_A3437 0.68 -0.5
3,960,492 + Rru_A3437 0.68 +0.0
3,960,492 + Rru_A3437 0.68 +0.0
3,960,492 + Rru_A3437 0.68 +0.0
3,960,492 + Rru_A3437 0.68 -1.0
3,960,493 - Rru_A3437 0.68 -1.0
3,960,493 - Rru_A3437 0.68 +0.0
3,960,493 - Rru_A3437 0.68 +0.0

Or see this region's nucleotide sequence