Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3352 and Rru_A3353 overlap by 4 nucleotides Rru_A3353 and Rru_A3354 are separated by 46 nucleotides Rru_A3354 and Rru_A3355 overlap by 4 nucleotides Rru_A3355 and Rru_A3356 are separated by 52 nucleotides
Rru_A3352: Rru_A3352 - Pseudouridylate synthase (NCBI), at 3,865,771 to 3,866,607
_A3352
Rru_A3353: Rru_A3353 - Small multidrug resistance protein (NCBI), at 3,866,604 to 3,866,924
_A3353
Rru_A3354: Rru_A3354 - Protein of unknown function DUF45 (NCBI), at 3,866,971 to 3,867,768
_A3354
Rru_A3355: Rru_A3355 - Uncharacterized conserved protein UCP006173 (NCBI), at 3,867,765 to 3,868,163
_A3355
Rru_A3356: Rru_A3356 - Polyhydroxyalkanoate depolymerase (NCBI), at 3,868,216 to 3,869,472
_A3356
Position (kb) 3866
3867
3868 Strain fitness (log2 ratio) -1
0
1
2
3 at 3866.654 kb on + strand, within Rru_A3353 at 3866.718 kb on + strand, within Rru_A3353 at 3866.718 kb on + strand, within Rru_A3353 at 3866.718 kb on + strand, within Rru_A3353 at 3866.719 kb on - strand, within Rru_A3353 at 3866.719 kb on - strand, within Rru_A3353 at 3866.719 kb on - strand, within Rru_A3353 at 3866.719 kb on - strand, within Rru_A3353 at 3866.779 kb on - strand, within Rru_A3353 at 3866.979 kb on - strand at 3867.116 kb on + strand, within Rru_A3354 at 3867.116 kb on + strand, within Rru_A3354 at 3867.116 kb on + strand, within Rru_A3354 at 3867.116 kb on + strand, within Rru_A3354 at 3867.117 kb on - strand, within Rru_A3354 at 3867.117 kb on - strand, within Rru_A3354 at 3867.496 kb on - strand, within Rru_A3354 at 3867.667 kb on - strand, within Rru_A3354 at 3867.790 kb on + strand at 3867.790 kb on + strand at 3867.791 kb on - strand at 3867.791 kb on - strand at 3867.791 kb on - strand at 3867.791 kb on - strand at 3867.791 kb on - strand at 3867.791 kb on - strand at 3867.791 kb on - strand at 3867.928 kb on + strand, within Rru_A3355 at 3868.018 kb on + strand, within Rru_A3355 at 3868.019 kb on - strand, within Rru_A3355 at 3868.037 kb on + strand, within Rru_A3355 at 3868.037 kb on + strand, within Rru_A3355 at 3868.037 kb on + strand, within Rru_A3355 at 3868.038 kb on - strand, within Rru_A3355 at 3868.038 kb on - strand, within Rru_A3355 at 3868.038 kb on - strand, within Rru_A3355 at 3868.325 kb on + strand at 3868.326 kb on - strand at 3868.556 kb on + strand, within Rru_A3356 at 3868.556 kb on + strand, within Rru_A3356 at 3868.589 kb on + strand, within Rru_A3356 at 3868.589 kb on + strand, within Rru_A3356 at 3868.589 kb on + strand, within Rru_A3356 at 3868.589 kb on + strand, within Rru_A3356 at 3868.589 kb on + strand, within Rru_A3356 at 3868.589 kb on + strand, within Rru_A3356 at 3868.589 kb on + strand, within Rru_A3356 at 3868.589 kb on + strand, within Rru_A3356 at 3868.598 kb on + strand, within Rru_A3356 at 3868.655 kb on + strand, within Rru_A3356
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 3,866,654 + Rru_A3353 0.16 +0.6 3,866,718 + Rru_A3353 0.36 +1.6 3,866,718 + Rru_A3353 0.36 +0.0 3,866,718 + Rru_A3353 0.36 +2.4 3,866,719 - Rru_A3353 0.36 +0.0 3,866,719 - Rru_A3353 0.36 +1.6 3,866,719 - Rru_A3353 0.36 +0.0 3,866,719 - Rru_A3353 0.36 +0.0 3,866,779 - Rru_A3353 0.55 +0.7 3,866,979 - +0.0 3,867,116 + Rru_A3354 0.18 +2.6 3,867,116 + Rru_A3354 0.18 -1.0 3,867,116 + Rru_A3354 0.18 +0.0 3,867,116 + Rru_A3354 0.18 +1.8 3,867,117 - Rru_A3354 0.18 +1.4 3,867,117 - Rru_A3354 0.18 +0.0 3,867,496 - Rru_A3354 0.66 +0.0 3,867,667 - Rru_A3354 0.87 +1.2 3,867,790 + -1.6 3,867,790 + +0.0 3,867,791 - +0.0 3,867,791 - +0.8 3,867,791 - +1.4 3,867,791 - +3.5 3,867,791 - +1.4 3,867,791 - +1.0 3,867,791 - +1.0 3,867,928 + Rru_A3355 0.41 +0.0 3,868,018 + Rru_A3355 0.63 +0.8 3,868,019 - Rru_A3355 0.64 +0.0 3,868,037 + Rru_A3355 0.68 +0.7 3,868,037 + Rru_A3355 0.68 +0.0 3,868,037 + Rru_A3355 0.68 +0.0 3,868,038 - Rru_A3355 0.68 +0.0 3,868,038 - Rru_A3355 0.68 +0.0 3,868,038 - Rru_A3355 0.68 +1.4 3,868,325 + +2.1 3,868,326 - +0.0 3,868,556 + Rru_A3356 0.27 -1.0 3,868,556 + Rru_A3356 0.27 +0.9 3,868,589 + Rru_A3356 0.30 +0.0 3,868,589 + Rru_A3356 0.30 +0.0 3,868,589 + Rru_A3356 0.30 +0.0 3,868,589 + Rru_A3356 0.30 +1.3 3,868,589 + Rru_A3356 0.30 +0.0 3,868,589 + Rru_A3356 0.30 +0.0 3,868,589 + Rru_A3356 0.30 +0.0 3,868,589 + Rru_A3356 0.30 +0.0 3,868,598 + Rru_A3356 0.30 -1.0 3,868,655 + Rru_A3356 0.35 +1.1
Or see this region's nucleotide sequence