Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3303

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
3,801,387	+		Rru_A3302	0.50	+0.1
3,801,387	+		Rru_A3302	0.50	+0.1
3,801,388	-		Rru_A3302	0.50	+0.1
3,801,388	-		Rru_A3302	0.50	-0.9
3,801,388	-		Rru_A3302	0.50	+0.1
3,801,391	-		Rru_A3302	0.50	+0.7
3,801,392	+		Rru_A3302	0.50	+1.2
3,801,393	-		Rru_A3302	0.50	+0.1
3,801,789	+		Rru_A3302	0.79	+1.1
3,801,790	-		Rru_A3302	0.79	-0.0
3,801,790	-		Rru_A3302	0.79	+1.1
3,801,790	-		Rru_A3302	0.79	-0.9
3,801,810	+		Rru_A3302	0.81	+2.2
3,801,810	+		Rru_A3302	0.81	+2.3
3,801,811	-		Rru_A3302	0.81	+0.9
3,801,811	-		Rru_A3302	0.81	+1.1
3,801,811	-		Rru_A3302	0.81	+1.1
3,801,811	-		Rru_A3302	0.81	-0.9
3,801,837	+		Rru_A3302	0.83	+1.0
3,801,837	+		Rru_A3302	0.83	+1.3
3,801,838	-		Rru_A3302	0.83	+0.1
3,801,843	+		Rru_A3302	0.83	+0.4
3,801,844	-		Rru_A3302	0.83	+0.7
3,801,919	-		Rru_A3302	0.89	+1.1
3,802,142	+				+0.1
3,802,142	+				+0.1
3,802,143	-				+0.6
3,802,143	-				+0.1
3,802,213	+				+1.9
3,802,213	+				+1.0
3,802,214	-				+1.0
3,802,214	-				+0.1
3,802,214	-				+1.3
3,802,214	-				+1.1
3,802,275	+				+0.9
3,802,344	+		Rru_A3303	0.10	+0.1
3,802,344	+		Rru_A3303	0.10	+0.1
3,802,344	+		Rru_A3303	0.10	+0.2
3,802,345	-		Rru_A3303	0.10	+0.9
3,802,345	-		Rru_A3303	0.10	+0.1
3,802,659	+		Rru_A3303	0.36	+1.3
3,802,659	+		Rru_A3303	0.36	+1.2
3,802,659	+		Rru_A3303	0.36	+0.1
3,802,659	+		Rru_A3303	0.36	+1.3
3,802,660	-		Rru_A3303	0.36	+0.1
3,802,660	-		Rru_A3303	0.36	+1.7
3,802,660	-		Rru_A3303	0.36	+1.4
3,802,660	-		Rru_A3303	0.36	+0.1
3,802,660	-		Rru_A3303	0.36	+1.1
3,802,660	-		Rru_A3303	0.36	-0.9
3,802,660	-		Rru_A3303	0.36	+0.1
3,802,660	-		Rru_A3303	0.36	+0.7
3,802,668	+		Rru_A3303	0.37	+0.1
3,802,668	+		Rru_A3303	0.37	+0.1
3,802,669	-		Rru_A3303	0.37	+1.6
3,802,725	+		Rru_A3303	0.42	+1.1
3,802,726	-		Rru_A3303	0.42	+0.1
3,802,726	-		Rru_A3303	0.42	+1.2
3,802,726	-		Rru_A3303	0.42	+0.1
3,802,726	-		Rru_A3303	0.42	+0.7
3,802,726	-		Rru_A3303	0.42	+1.1
3,802,726	-		Rru_A3303	0.42	+0.8
3,802,744	-		Rru_A3303	0.43	+0.6
3,802,773	-		Rru_A3303	0.46	+0.1
3,802,854	+		Rru_A3303	0.52	+0.1
3,802,854	+		Rru_A3303	0.52	+0.8
3,802,854	+		Rru_A3303	0.52	+2.1
3,802,854	+		Rru_A3303	0.52	+0.5
3,802,855	-		Rru_A3303	0.52	+1.1
3,803,058	+		Rru_A3303	0.69	+1.0
3,803,058	+		Rru_A3303	0.69	-0.5
3,803,059	-		Rru_A3303	0.69	+0.3
3,803,059	-		Rru_A3303	0.69	+0.9
3,803,059	-		Rru_A3303	0.69	+1.3
3,803,151	+		Rru_A3303	0.77	+1.2
3,803,169	+		Rru_A3303	0.78	+0.1
3,803,170	-		Rru_A3303	0.78	+0.1
3,803,289	-		Rru_A3303	0.88	+0.7
3,803,304	+		Rru_A3303	0.89	+0.1
3,803,304	+		Rru_A3303	0.89	+1.1
3,803,304	+		Rru_A3303	0.89	+0.1
3,803,304	+		Rru_A3303	0.89	+1.2
3,803,305	-		Rru_A3303	0.89	+0.1
3,803,305	-		Rru_A3303	0.89	+1.5
3,803,305	-		Rru_A3303	0.89	+1.1
3,803,392	-				+0.1
3,803,430	+				+0.6
3,803,430	+				+0.9
3,803,431	-				+1.5
3,803,489	+				+1.1
3,803,490	-				-0.9
3,803,490	-				+0.1
3,803,524	+				+1.7
3,803,524	+				+0.1
3,803,524	+				+0.1
3,803,524	+				+0.8
3,803,525	-				-0.3
3,803,525	-				+0.1
3,803,525	-				+0.1
3,803,679	-		Rru_A3304	0.22	+0.8
3,803,965	+		Rru_A3304	0.60	+0.9
3,803,965	+		Rru_A3304	0.60	+0.9
3,804,129	+		Rru_A3304	0.82	+0.1
3,804,129	+		Rru_A3304	0.82	+0.2
3,804,129	+		Rru_A3304	0.82	+0.5
3,804,129	+		Rru_A3304	0.82	+1.3
3,804,130	-		Rru_A3304	0.82	+1.1
3,804,205	+				-0.9
3,804,205	+				+1.4
3,804,205	+				+1.1
3,804,205	+				-0.0
3,804,205	+				+0.8
3,804,205	+				+0.9
3,804,206	-				+1.2
3,804,206	-				+0.5
3,804,206	-				+1.0
3,804,206	-				+1.2
3,804,206	-				+0.4
3,804,206	-				+1.0
3,804,244	+				+0.6
3,804,244	+				+0.1
3,804,244	+				+0.1
3,804,244	+				+1.0
3,804,244	+				+0.1
3,804,244	+				+0.4
3,804,244	+				+0.1
3,804,244	+				+1.6
3,804,245	-				+1.0
3,804,245	-				+0.1
3,804,245	-				+0.1
3,804,245	-				+0.1
3,804,245	-				+0.1
3,804,246	+				+0.1
3,804,247	-				-0.5
3,804,327	-				+0.8
3,804,327	-				+0.6