Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3266 and Rru_A3267 overlap by 4 nucleotides Rru_A3267 and Rru_A3268 overlap by 4 nucleotides Rru_A3268 and Rru_A3269 overlap by 23 nucleotides
Rru_A3266: Rru_A3266 - Homoserine O-acetyltransferase (NCBI), at 3,765,238 to 3,766,413
_A3266
Rru_A3267: Rru_A3267 - Methionine biosynthesis MetW (NCBI), at 3,766,410 to 3,767,045
_A3267
Rru_A3268: Rru_A3268 - hypothetical protein (NCBI), at 3,767,042 to 3,767,668
_A3268
Rru_A3269: Rru_A3269 - hypothetical protein (NCBI), at 3,767,646 to 3,768,440
_A3269
Position (kb)
3766
3767
3768 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3765.512 kb on - strand, within Rru_A3266 at 3765.512 kb on - strand, within Rru_A3266 at 3765.512 kb on - strand, within Rru_A3266 at 3765.512 kb on - strand, within Rru_A3266 at 3765.739 kb on + strand, within Rru_A3266 at 3765.924 kb on + strand, within Rru_A3266 at 3765.924 kb on + strand, within Rru_A3266 at 3765.924 kb on + strand, within Rru_A3266 at 3765.931 kb on + strand, within Rru_A3266 at 3765.931 kb on + strand, within Rru_A3266 at 3765.931 kb on + strand, within Rru_A3266 at 3765.931 kb on + strand, within Rru_A3266 at 3765.931 kb on + strand, within Rru_A3266 at 3765.932 kb on - strand, within Rru_A3266 at 3765.932 kb on - strand, within Rru_A3266 at 3765.932 kb on - strand, within Rru_A3266 at 3765.932 kb on - strand, within Rru_A3266 at 3765.932 kb on - strand, within Rru_A3266 at 3765.997 kb on + strand, within Rru_A3266 at 3765.998 kb on - strand, within Rru_A3266 at 3765.998 kb on - strand, within Rru_A3266 at 3765.998 kb on - strand, within Rru_A3266 at 3765.998 kb on - strand, within Rru_A3266 at 3766.081 kb on + strand, within Rru_A3266 at 3766.081 kb on + strand, within Rru_A3266 at 3766.081 kb on + strand, within Rru_A3266 at 3766.081 kb on + strand, within Rru_A3266 at 3766.081 kb on + strand, within Rru_A3266 at 3766.087 kb on + strand, within Rru_A3266 at 3766.087 kb on + strand, within Rru_A3266 at 3766.087 kb on + strand, within Rru_A3266 at 3766.088 kb on - strand, within Rru_A3266 at 3766.443 kb on + strand at 3766.527 kb on + strand, within Rru_A3267 at 3766.527 kb on + strand, within Rru_A3267 at 3766.527 kb on + strand, within Rru_A3267 at 3766.527 kb on + strand, within Rru_A3267 at 3766.528 kb on - strand, within Rru_A3267 at 3766.528 kb on - strand, within Rru_A3267 at 3766.528 kb on - strand, within Rru_A3267 at 3766.671 kb on + strand, within Rru_A3267 at 3766.671 kb on + strand, within Rru_A3267 at 3766.671 kb on + strand, within Rru_A3267 at 3766.671 kb on + strand, within Rru_A3267 at 3766.833 kb on + strand, within Rru_A3267 at 3766.842 kb on + strand, within Rru_A3267 at 3766.843 kb on - strand, within Rru_A3267 at 3767.366 kb on + strand, within Rru_A3268 at 3767.406 kb on - strand, within Rru_A3268 at 3767.737 kb on + strand, within Rru_A3269 at 3767.737 kb on + strand, within Rru_A3269 at 3767.737 kb on + strand, within Rru_A3269 at 3767.738 kb on - strand, within Rru_A3269 at 3767.763 kb on - strand, within Rru_A3269
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 3,765,512 - Rru_A3266 0.23 -1.8 3,765,512 - Rru_A3266 0.23 +0.1 3,765,512 - Rru_A3266 0.23 +0.1 3,765,512 - Rru_A3266 0.23 +0.1 3,765,739 + Rru_A3266 0.43 +0.1 3,765,924 + Rru_A3266 0.58 +0.1 3,765,924 + Rru_A3266 0.58 +0.1 3,765,924 + Rru_A3266 0.58 -2.5 3,765,931 + Rru_A3266 0.59 -3.4 3,765,931 + Rru_A3266 0.59 -1.4 3,765,931 + Rru_A3266 0.59 -1.5 3,765,931 + Rru_A3266 0.59 -0.8 3,765,931 + Rru_A3266 0.59 -2.2 3,765,932 - Rru_A3266 0.59 -1.4 3,765,932 - Rru_A3266 0.59 +0.1 3,765,932 - Rru_A3266 0.59 +0.1 3,765,932 - Rru_A3266 0.59 -1.2 3,765,932 - Rru_A3266 0.59 +0.1 3,765,997 + Rru_A3266 0.65 -1.5 3,765,998 - Rru_A3266 0.65 +0.1 3,765,998 - Rru_A3266 0.65 +0.1 3,765,998 - Rru_A3266 0.65 +0.1 3,765,998 - Rru_A3266 0.65 +0.1 3,766,081 + Rru_A3266 0.72 -1.7 3,766,081 + Rru_A3266 0.72 -0.6 3,766,081 + Rru_A3266 0.72 +0.1 3,766,081 + Rru_A3266 0.72 -0.8 3,766,081 + Rru_A3266 0.72 -1.7 3,766,087 + Rru_A3266 0.72 -1.9 3,766,087 + Rru_A3266 0.72 +0.1 3,766,087 + Rru_A3266 0.72 +0.1 3,766,088 - Rru_A3266 0.72 +0.1 3,766,443 + +0.1 3,766,527 + Rru_A3267 0.18 -1.8 3,766,527 + Rru_A3267 0.18 -0.9 3,766,527 + Rru_A3267 0.18 +0.1 3,766,527 + Rru_A3267 0.18 -1.6 3,766,528 - Rru_A3267 0.19 -1.4 3,766,528 - Rru_A3267 0.19 -0.9 3,766,528 - Rru_A3267 0.19 -0.9 3,766,671 + Rru_A3267 0.41 +0.1 3,766,671 + Rru_A3267 0.41 -2.4 3,766,671 + Rru_A3267 0.41 -2.3 3,766,671 + Rru_A3267 0.41 -2.4 3,766,833 + Rru_A3267 0.67 -1.5 3,766,842 + Rru_A3267 0.68 +0.1 3,766,843 - Rru_A3267 0.68 -0.9 3,767,366 + Rru_A3268 0.52 +1.0 3,767,406 - Rru_A3268 0.58 +0.1 3,767,737 + Rru_A3269 0.11 +0.1 3,767,737 + Rru_A3269 0.11 +1.1 3,767,737 + Rru_A3269 0.11 +1.1 3,767,738 - Rru_A3269 0.12 +0.6 3,767,763 - Rru_A3269 0.15 +0.1
Or see this region's nucleotide sequence