Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3258

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
3,752,714	+		Rru_A3256	0.79	+1.5
3,753,716	+				+0.9
3,753,716	+				+0.4
3,753,716	+				+1.3
3,753,794	+				+0.6
3,753,794	+				+0.1
3,753,794	+				+0.1
3,753,794	+				+0.1
3,753,795	-				-0.4
3,753,795	-				+0.1
3,753,838	-				+1.9
3,753,934	+		Rru_A3258	0.11	+1.4
3,753,934	+		Rru_A3258	0.11	+0.1
3,753,935	-		Rru_A3258	0.11	+0.1
3,753,935	-		Rru_A3258	0.11	+0.6
3,753,935	-		Rru_A3258	0.11	+0.6
3,753,935	-		Rru_A3258	0.11	+0.1
3,753,935	-		Rru_A3258	0.11	+1.2
3,754,376	+		Rru_A3258	0.30	+1.5
3,754,377	-		Rru_A3258	0.30	+0.1
3,754,433	+		Rru_A3258	0.32	+1.2
3,754,433	+		Rru_A3258	0.32	+1.6
3,754,433	+		Rru_A3258	0.32	-0.9
3,754,433	+		Rru_A3258	0.32	+1.3
3,754,433	+		Rru_A3258	0.32	-0.2
3,754,433	+		Rru_A3258	0.32	+1.8
3,754,433	+		Rru_A3258	0.32	+0.1
3,754,434	-		Rru_A3258	0.32	+0.1
3,754,434	-		Rru_A3258	0.32	+0.1
3,754,434	-		Rru_A3258	0.32	+0.4
3,754,434	-		Rru_A3258	0.32	+0.1
3,754,434	-		Rru_A3258	0.32	+1.3
3,754,434	-		Rru_A3258	0.32	+0.1
3,754,434	-		Rru_A3258	0.32	+1.1
3,754,496	+		Rru_A3258	0.35	+2.0
3,754,497	-		Rru_A3258	0.35	-0.9
3,754,675	+		Rru_A3258	0.42	+0.5
3,754,676	-		Rru_A3258	0.42	-0.5
3,754,797	-		Rru_A3258	0.48	+1.3
3,755,039	+		Rru_A3258	0.58	-0.9
3,755,040	-		Rru_A3258	0.58	+2.1
3,755,040	-		Rru_A3258	0.58	+1.2
3,755,040	-		Rru_A3258	0.58	+1.2
3,755,042	+		Rru_A3258	0.58	+0.1
3,755,042	+		Rru_A3258	0.58	+0.1
3,755,042	+		Rru_A3258	0.58	+0.1
3,755,042	+		Rru_A3258	0.58	+0.3
3,755,042	+		Rru_A3258	0.58	+1.3
3,755,043	-		Rru_A3258	0.58	+0.1
3,755,043	-		Rru_A3258	0.58	+0.9
3,755,043	-		Rru_A3258	0.58	+1.4
3,755,043	-		Rru_A3258	0.58	+1.9
3,755,088	-		Rru_A3258	0.60	+0.1
3,755,088	-		Rru_A3258	0.60	-0.4
3,755,333	+		Rru_A3258	0.70	+0.1
3,755,333	+		Rru_A3258	0.70	+0.7
3,755,334	-		Rru_A3258	0.70	+1.1
3,755,354	+		Rru_A3258	0.71	+1.1
3,755,366	+		Rru_A3258	0.72	+1.1
3,755,366	+		Rru_A3258	0.72	+1.2
3,755,396	+		Rru_A3258	0.73	+0.1
3,755,531	+		Rru_A3258	0.79	+1.6
3,755,531	+		Rru_A3258	0.79	+0.5
3,755,532	-		Rru_A3258	0.79	+1.7
3,755,533	+		Rru_A3258	0.79	+1.5
3,755,533	+		Rru_A3258	0.79	-0.6
3,755,533	+		Rru_A3258	0.79	+1.8
3,755,533	+		Rru_A3258	0.79	+1.1
3,755,567	+		Rru_A3258	0.80	+0.1
3,755,568	-		Rru_A3258	0.80	+1.0
3,755,568	-		Rru_A3258	0.80	+0.9
3,755,975	+				+0.1
3,755,975	+				+1.2
3,755,976	-				+0.4
3,755,976	-				+1.1
3,756,032	+				+1.6
3,756,032	+				+0.1
3,756,032	+				+1.2
3,756,032	+				+0.4
3,756,032	+				+0.1
3,756,032	+				+0.1
3,756,033	-				+0.7
3,756,033	-				+1.0
3,756,078	+				+1.5
3,756,079	-				+1.0
3,756,197	-		Rru_A3259	0.19	+0.1
3,756,307	+		Rru_A3259	0.39	+0.1
3,756,307	+		Rru_A3259	0.39	+1.1
3,756,307	+		Rru_A3259	0.39	+0.1
3,756,307	+		Rru_A3259	0.39	+0.1
3,756,307	+		Rru_A3259	0.39	+0.1
3,756,308	-		Rru_A3259	0.39	+0.1
3,756,361	+		Rru_A3259	0.49	+1.8
3,756,361	+		Rru_A3259	0.49	+0.1
3,756,362	-		Rru_A3259	0.49	+0.1
3,756,394	+		Rru_A3259	0.55	+0.1
3,756,395	-		Rru_A3259	0.55	+0.1
3,756,538	+		Rru_A3259	0.81	+0.1
3,756,539	-		Rru_A3259	0.82	+2.1
3,756,653	-				+0.1
3,756,653	-				+0.1
3,756,653	-				+0.9
3,756,875	+		Rru_A3260	0.12	-1.0
3,756,875	+		Rru_A3260	0.12	+0.6
3,756,875	+		Rru_A3260	0.12	+1.7
3,756,876	-		Rru_A3260	0.12	+0.0
3,756,876	-		Rru_A3260	0.12	-1.0
3,756,876	-		Rru_A3260	0.12	+1.0
3,756,876	-		Rru_A3260	0.12	+0.7
3,756,876	-		Rru_A3260	0.12	+0.0
3,756,876	-		Rru_A3260	0.12	+1.2
3,756,917	+		Rru_A3260	0.15	+0.0
3,756,917	+		Rru_A3260	0.15	+1.0
3,756,935	+		Rru_A3260	0.17	-1.0
3,756,936	-		Rru_A3260	0.17	+1.1
3,756,936	-		Rru_A3260	0.17	+1.5