Strain Fitness in Rhodospirillum rubrum S1H around Rru_AR0059

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3224 and Rru_A3225 are separated by 61 nucleotidesRru_A3225 and Rru_AR0059 are separated by 163 nucleotidesRru_AR0059 and Rru_A3226 are separated by 95 nucleotides Rru_A3224: Rru_A3224 - conserved hypothetical protein PA1030 (NCBI), at 3,718,643 to 3,719,305 _A3224 Rru_A3225: Rru_A3225 - hypothetical protein (NCBI), at 3,719,367 to 3,719,753 _A3225 Rru_AR0059: Rru_AR0059 - tRNA-Gly (NCBI), at 3,719,917 to 3,719,990 _AR0059 Rru_A3226: Rru_A3226 - putative enoyl-acyl carrier protein reductase (NCBI), at 3,720,086 to 3,720,859 _A3226 Position (kb) 3719 3720Strain fitness (log2 ratio) -1 0 1 2at 3718.920 kb on + strand, within Rru_A3224at 3718.921 kb on - strand, within Rru_A3224at 3719.017 kb on + strand, within Rru_A3224at 3719.017 kb on + strand, within Rru_A3224at 3719.017 kb on + strand, within Rru_A3224at 3719.018 kb on - strand, within Rru_A3224at 3719.018 kb on - strand, within Rru_A3224at 3719.018 kb on - strand, within Rru_A3224at 3719.080 kb on - strand, within Rru_A3224at 3719.124 kb on + strand, within Rru_A3224at 3719.124 kb on + strand, within Rru_A3224at 3719.124 kb on + strand, within Rru_A3224at 3719.208 kb on + strand, within Rru_A3224at 3719.208 kb on + strand, within Rru_A3224at 3719.209 kb on - strand, within Rru_A3224at 3719.209 kb on - strand, within Rru_A3224at 3719.356 kb on - strandat 3719.395 kb on + strandat 3719.396 kb on - strandat 3719.421 kb on + strand, within Rru_A3225at 3719.587 kb on + strand, within Rru_A3225at 3719.587 kb on + strand, within Rru_A3225at 3719.587 kb on + strand, within Rru_A3225at 3719.588 kb on - strand, within Rru_A3225at 3719.588 kb on - strand, within Rru_A3225at 3719.772 kb on + strandat 3719.773 kb on - strandat 3719.773 kb on - strandat 3719.790 kb on + strandat 3719.792 kb on + strandat 3719.792 kb on + strandat 3719.793 kb on - strandat 3719.793 kb on - strandat 3719.946 kb on + strand, within Rru_AR0059at 3719.972 kb on - strand, within Rru_AR0059at 3719.972 kb on - strand, within Rru_AR0059at 3719.982 kb on + strand, within Rru_AR0059at 3720.004 kb on + strandat 3720.005 kb on - strandat 3720.006 kb on + strandat 3720.006 kb on + strandat 3720.007 kb on - strandat 3720.007 kb on - strandat 3720.100 kb on + strandat 3720.100 kb on + strandat 3720.100 kb on + strandat 3720.100 kb on + strandat 3720.100 kb on + strandat 3720.101 kb on - strandat 3720.101 kb on - strandat 3720.120 kb on + strandat 3720.121 kb on - strandat 3720.387 kb on + strand, within Rru_A3226at 3720.388 kb on - strand, within Rru_A3226at 3720.388 kb on - strand, within Rru_A3226at 3720.388 kb on - strand, within Rru_A3226at 3720.414 kb on + strand, within Rru_A3226at 3720.414 kb on + strand, within Rru_A3226at 3720.414 kb on + strand, within Rru_A3226at 3720.414 kb on + strand, within Rru_A3226at 3720.414 kb on + strand, within Rru_A3226at 3720.414 kb on + strand, within Rru_A3226at 3720.414 kb on + strand, within Rru_A3226at 3720.414 kb on + strand, within Rru_A3226at 3720.415 kb on - strand, within Rru_A3226at 3720.415 kb on - strand, within Rru_A3226at 3720.415 kb on - strand, within Rru_A3226at 3720.465 kb on + strand, within Rru_A3226at 3720.465 kb on + strand, within Rru_A3226at 3720.712 kb on - strand, within Rru_A3226at 3720.735 kb on + strand, within Rru_A3226at 3720.735 kb on + strand, within Rru_A3226at 3720.736 kb on - strand, within Rru_A3226at 3720.736 kb on - strand, within Rru_A3226at 3720.736 kb on - strand, within Rru_A3226at 3720.736 kb on - strand, within Rru_A3226at 3720.736 kb on - strand, within Rru_A3226at 3720.772 kb on - strand, within Rru_A3226at 3720.772 kb on - strand, within Rru_A3226at 3720.859 kb on + strandat 3720.859 kb on + strandat 3720.859 kb on + strandat 3720.859 kb on + strandat 3720.859 kb on + strandat 3720.859 kb on + strandat 3720.860 kb on - strandat 3720.860 kb on - strandat 3720.860 kb on - strandat 3720.860 kb on - strandat 3720.860 kb on - strandat 3720.939 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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3,718,920 + Rru_A3224 0.42 +0.0
3,718,921 - Rru_A3224 0.42 +0.2
3,719,017 + Rru_A3224 0.56 +0.0
3,719,017 + Rru_A3224 0.56 +0.0
3,719,017 + Rru_A3224 0.56 +0.0
3,719,018 - Rru_A3224 0.57 +0.0
3,719,018 - Rru_A3224 0.57 +0.0
3,719,018 - Rru_A3224 0.57 -1.0
3,719,080 - Rru_A3224 0.66 +0.0
3,719,124 + Rru_A3224 0.73 +1.0
3,719,124 + Rru_A3224 0.73 +1.2
3,719,124 + Rru_A3224 0.73 +0.5
3,719,208 + Rru_A3224 0.85 +0.7
3,719,208 + Rru_A3224 0.85 +0.0
3,719,209 - Rru_A3224 0.85 +1.5
3,719,209 - Rru_A3224 0.85 +0.8
3,719,356 - +0.4
3,719,395 + +0.5
3,719,396 - +0.0
3,719,421 + Rru_A3225 0.14 +0.9
3,719,587 + Rru_A3225 0.57 +0.0
3,719,587 + Rru_A3225 0.57 +0.0
3,719,587 + Rru_A3225 0.57 +1.3
3,719,588 - Rru_A3225 0.57 +0.0
3,719,588 - Rru_A3225 0.57 +0.0
3,719,772 + +0.0
3,719,773 - +0.0
3,719,773 - +0.0
3,719,790 + -0.4
3,719,792 + +0.6
3,719,792 + -1.0
3,719,793 - +0.0
3,719,793 - +1.1
3,719,946 + Rru_AR0059 0.39 +0.1
3,719,972 - Rru_AR0059 0.74 +0.4
3,719,972 - Rru_AR0059 0.74 +0.0
3,719,982 + Rru_AR0059 0.88 +0.0
3,720,004 + +0.0
3,720,005 - +0.0
3,720,006 + +0.0
3,720,006 + +0.0
3,720,007 - +1.3
3,720,007 - +0.0
3,720,100 + +1.1
3,720,100 + +1.3
3,720,100 + +0.0
3,720,100 + +2.0
3,720,100 + +0.0
3,720,101 - +0.0
3,720,101 - -0.4
3,720,120 + +0.9
3,720,121 - +0.0
3,720,387 + Rru_A3226 0.39 +0.0
3,720,388 - Rru_A3226 0.39 +0.8
3,720,388 - Rru_A3226 0.39 +1.1
3,720,388 - Rru_A3226 0.39 +1.4
3,720,414 + Rru_A3226 0.42 -1.0
3,720,414 + Rru_A3226 0.42 +0.0
3,720,414 + Rru_A3226 0.42 +0.0
3,720,414 + Rru_A3226 0.42 +0.0
3,720,414 + Rru_A3226 0.42 +0.0
3,720,414 + Rru_A3226 0.42 +0.0
3,720,414 + Rru_A3226 0.42 +0.0
3,720,414 + Rru_A3226 0.42 +0.9
3,720,415 - Rru_A3226 0.43 +0.9
3,720,415 - Rru_A3226 0.43 +0.1
3,720,415 - Rru_A3226 0.43 +0.0
3,720,465 + Rru_A3226 0.49 +0.3
3,720,465 + Rru_A3226 0.49 +0.0
3,720,712 - Rru_A3226 0.81 +0.8
3,720,735 + Rru_A3226 0.84 -1.5
3,720,735 + Rru_A3226 0.84 -0.1
3,720,736 - Rru_A3226 0.84 -1.0
3,720,736 - Rru_A3226 0.84 -1.0
3,720,736 - Rru_A3226 0.84 +0.6
3,720,736 - Rru_A3226 0.84 +0.7
3,720,736 - Rru_A3226 0.84 +0.0
3,720,772 - Rru_A3226 0.89 +1.5
3,720,772 - Rru_A3226 0.89 +0.8
3,720,859 + +0.8
3,720,859 + +1.2
3,720,859 + +1.0
3,720,859 + +0.0
3,720,859 + +1.4
3,720,859 + +0.0
3,720,860 - +0.0
3,720,860 - +1.6
3,720,860 - +0.4
3,720,860 - +0.8
3,720,860 - +0.0
3,720,939 - -1.5

Or see this region's nucleotide sequence