Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3166

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3164 and Rru_A3165 are separated by 72 nucleotidesRru_A3165 and Rru_A3166 are separated by 87 nucleotidesRru_A3166 and Rru_A3167 are separated by 30 nucleotides Rru_A3164: Rru_A3164 - hypothetical protein (NCBI), at 3,655,665 to 3,656,663 _A3164 Rru_A3165: Rru_A3165 - Histidinol-phosphate phosphatase, putative, inositol monophosphatase (NCBI), at 3,656,736 to 3,657,527 _A3165 Rru_A3166: Rru_A3166 - extracellular solute-binding protein, family 5 (NCBI), at 3,657,615 to 3,659,462 _A3166 Rru_A3167: Rru_A3167 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 3,659,493 to 3,660,596 _A3167 Position (kb) 3657 3658 3659 3660Strain fitness (log2 ratio) -2 -1 0 1at 3656.646 kb on + strandat 3656.646 kb on + strandat 3656.647 kb on - strandat 3656.647 kb on - strandat 3656.661 kb on + strandat 3656.789 kb on - strandat 3657.198 kb on + strand, within Rru_A3165at 3657.198 kb on + strand, within Rru_A3165at 3657.200 kb on + strand, within Rru_A3165at 3657.201 kb on - strand, within Rru_A3165at 3657.201 kb on - strand, within Rru_A3165at 3657.201 kb on - strand, within Rru_A3165at 3657.297 kb on + strand, within Rru_A3165at 3657.304 kb on - strand, within Rru_A3165at 3657.360 kb on + strand, within Rru_A3165at 3657.360 kb on + strand, within Rru_A3165at 3657.366 kb on + strand, within Rru_A3165at 3657.589 kb on + strandat 3657.589 kb on + strandat 3657.590 kb on - strandat 3657.730 kb on - strandat 3657.730 kb on - strandat 3657.744 kb on + strandat 3657.771 kb on + strandat 3657.771 kb on + strandat 3657.771 kb on + strandat 3657.846 kb on + strand, within Rru_A3166at 3657.848 kb on + strand, within Rru_A3166at 3657.934 kb on - strand, within Rru_A3166at 3658.090 kb on - strand, within Rru_A3166at 3658.092 kb on - strand, within Rru_A3166at 3658.092 kb on - strand, within Rru_A3166at 3658.098 kb on + strand, within Rru_A3166at 3658.099 kb on - strand, within Rru_A3166at 3658.102 kb on - strand, within Rru_A3166at 3658.221 kb on + strand, within Rru_A3166at 3658.320 kb on + strand, within Rru_A3166at 3658.320 kb on + strand, within Rru_A3166at 3658.320 kb on + strand, within Rru_A3166at 3658.320 kb on + strand, within Rru_A3166at 3658.321 kb on - strand, within Rru_A3166at 3658.338 kb on + strand, within Rru_A3166at 3658.338 kb on + strand, within Rru_A3166at 3658.401 kb on + strand, within Rru_A3166at 3658.401 kb on + strand, within Rru_A3166at 3658.401 kb on + strand, within Rru_A3166at 3658.402 kb on - strand, within Rru_A3166at 3658.469 kb on + strand, within Rru_A3166at 3658.494 kb on + strand, within Rru_A3166at 3658.495 kb on - strand, within Rru_A3166at 3658.495 kb on - strand, within Rru_A3166at 3658.495 kb on - strand, within Rru_A3166at 3658.583 kb on + strand, within Rru_A3166at 3658.632 kb on + strand, within Rru_A3166at 3658.633 kb on - strand, within Rru_A3166at 3658.633 kb on - strand, within Rru_A3166at 3658.671 kb on + strand, within Rru_A3166at 3658.671 kb on + strand, within Rru_A3166at 3658.672 kb on - strand, within Rru_A3166at 3658.681 kb on - strand, within Rru_A3166at 3658.807 kb on - strand, within Rru_A3166at 3659.046 kb on - strand, within Rru_A3166at 3659.322 kb on + strandat 3659.322 kb on + strandat 3659.322 kb on + strandat 3659.323 kb on - strandat 3659.323 kb on - strandat 3659.323 kb on - strandat 3659.460 kb on + strandat 3659.460 kb on + strandat 3659.461 kb on - strandat 3659.461 kb on - strandat 3659.502 kb on + strandat 3659.503 kb on - strandat 3659.503 kb on - strandat 3659.503 kb on - strandat 3659.503 kb on - strandat 3659.749 kb on - strand, within Rru_A3167at 3659.824 kb on - strand, within Rru_A3167at 3659.850 kb on + strand, within Rru_A3167at 3659.851 kb on - strand, within Rru_A3167at 3659.853 kb on + strand, within Rru_A3167at 3659.937 kb on + strand, within Rru_A3167at 3659.937 kb on + strand, within Rru_A3167at 3659.937 kb on + strand, within Rru_A3167at 3659.938 kb on - strand, within Rru_A3167at 3660.058 kb on + strand, within Rru_A3167at 3660.059 kb on - strand, within Rru_A3167at 3660.059 kb on - strand, within Rru_A3167at 3660.059 kb on - strand, within Rru_A3167at 3660.165 kb on + strand, within Rru_A3167at 3660.176 kb on + strand, within Rru_A3167at 3660.176 kb on + strand, within Rru_A3167at 3660.270 kb on + strand, within Rru_A3167at 3660.270 kb on + strand, within Rru_A3167at 3660.442 kb on + strand, within Rru_A3167

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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3,656,646 + +0.0
3,656,646 + +0.7
3,656,647 - +0.1
3,656,647 - +0.0
3,656,661 + +0.6
3,656,789 - +0.0
3,657,198 + Rru_A3165 0.58 +0.0
3,657,198 + Rru_A3165 0.58 +0.0
3,657,200 + Rru_A3165 0.59 -0.0
3,657,201 - Rru_A3165 0.59 +1.3
3,657,201 - Rru_A3165 0.59 -0.2
3,657,201 - Rru_A3165 0.59 +0.0
3,657,297 + Rru_A3165 0.71 +0.0
3,657,304 - Rru_A3165 0.72 +0.5
3,657,360 + Rru_A3165 0.79 +0.0
3,657,360 + Rru_A3165 0.79 +0.1
3,657,366 + Rru_A3165 0.80 +0.0
3,657,589 + -1.0
3,657,589 + +0.0
3,657,590 - +0.0
3,657,730 - +0.0
3,657,730 - +0.0
3,657,744 + +0.0
3,657,771 + +0.0
3,657,771 + +0.0
3,657,771 + +0.0
3,657,846 + Rru_A3166 0.12 +0.0
3,657,848 + Rru_A3166 0.13 +0.0
3,657,934 - Rru_A3166 0.17 +0.0
3,658,090 - Rru_A3166 0.26 -1.4
3,658,092 - Rru_A3166 0.26 +0.0
3,658,092 - Rru_A3166 0.26 -0.4
3,658,098 + Rru_A3166 0.26 -1.0
3,658,099 - Rru_A3166 0.26 +0.0
3,658,102 - Rru_A3166 0.26 +0.0
3,658,221 + Rru_A3166 0.33 +0.0
3,658,320 + Rru_A3166 0.38 -1.0
3,658,320 + Rru_A3166 0.38 +0.0
3,658,320 + Rru_A3166 0.38 +0.0
3,658,320 + Rru_A3166 0.38 +0.0
3,658,321 - Rru_A3166 0.38 +0.0
3,658,338 + Rru_A3166 0.39 +0.0
3,658,338 + Rru_A3166 0.39 +0.0
3,658,401 + Rru_A3166 0.43 +0.0
3,658,401 + Rru_A3166 0.43 +0.0
3,658,401 + Rru_A3166 0.43 +0.0
3,658,402 - Rru_A3166 0.43 +0.0
3,658,469 + Rru_A3166 0.46 +0.9
3,658,494 + Rru_A3166 0.48 +0.0
3,658,495 - Rru_A3166 0.48 +0.0
3,658,495 - Rru_A3166 0.48 -1.6
3,658,495 - Rru_A3166 0.48 +0.0
3,658,583 + Rru_A3166 0.52 +0.0
3,658,632 + Rru_A3166 0.55 +0.0
3,658,633 - Rru_A3166 0.55 +0.0
3,658,633 - Rru_A3166 0.55 +0.0
3,658,671 + Rru_A3166 0.57 +0.0
3,658,671 + Rru_A3166 0.57 -1.3
3,658,672 - Rru_A3166 0.57 +0.0
3,658,681 - Rru_A3166 0.58 +0.0
3,658,807 - Rru_A3166 0.65 -1.4
3,659,046 - Rru_A3166 0.77 +0.0
3,659,322 + +0.0
3,659,322 + -1.0
3,659,322 + +0.0
3,659,323 - +0.0
3,659,323 - +0.0
3,659,323 - -1.0
3,659,460 + +0.0
3,659,460 + +0.8
3,659,461 - +0.5
3,659,461 - +0.0
3,659,502 + +0.0
3,659,503 - +0.0
3,659,503 - +0.0
3,659,503 - -1.0
3,659,503 - +0.0
3,659,749 - Rru_A3167 0.23 +0.0
3,659,824 - Rru_A3167 0.30 +0.0
3,659,850 + Rru_A3167 0.32 +0.0
3,659,851 - Rru_A3167 0.32 +0.0
3,659,853 + Rru_A3167 0.33 -2.3
3,659,937 + Rru_A3167 0.40 +1.3
3,659,937 + Rru_A3167 0.40 +0.0
3,659,937 + Rru_A3167 0.40 +0.0
3,659,938 - Rru_A3167 0.40 -0.6
3,660,058 + Rru_A3167 0.51 +0.0
3,660,059 - Rru_A3167 0.51 +0.0
3,660,059 - Rru_A3167 0.51 +0.0
3,660,059 - Rru_A3167 0.51 +0.0
3,660,165 + Rru_A3167 0.61 +0.0
3,660,176 + Rru_A3167 0.62 +0.0
3,660,176 + Rru_A3167 0.62 -0.7
3,660,270 + Rru_A3167 0.70 -1.6
3,660,270 + Rru_A3167 0.70 +0.0
3,660,442 + Rru_A3167 0.86 +0.0

Or see this region's nucleotide sequence