Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3063

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
3,527,724	-		Rru_A3062	0.62	+0.4
3,527,724	-		Rru_A3062	0.62	+0.0
3,527,878	-		Rru_A3062	0.70	+0.5
3,527,948	-		Rru_A3062	0.73	+0.0
3,527,948	-		Rru_A3062	0.73	+0.4
3,527,954	+		Rru_A3062	0.73	+0.9
3,527,954	+		Rru_A3062	0.73	+1.8
3,527,954	+		Rru_A3062	0.73	+0.8
3,527,955	-		Rru_A3062	0.73	+0.0
3,527,955	-		Rru_A3062	0.73	+1.2
3,528,051	+		Rru_A3062	0.78	+0.6
3,528,051	+		Rru_A3062	0.78	+1.0
3,528,051	+		Rru_A3062	0.78	-2.0
3,528,051	+		Rru_A3062	0.78	+0.7
3,528,051	+		Rru_A3062	0.78	+0.1
3,528,052	-		Rru_A3062	0.78	+0.0
3,528,052	-		Rru_A3062	0.78	+1.2
3,528,052	-		Rru_A3062	0.78	+0.0
3,528,052	-		Rru_A3062	0.78	+0.0
3,528,052	-		Rru_A3062	0.78	+1.0
3,528,052	-		Rru_A3062	0.78	+0.0
3,528,053	+		Rru_A3062	0.78	-0.1
3,528,053	+		Rru_A3062	0.78	+0.9
3,528,053	+		Rru_A3062	0.78	-1.0
3,528,053	+		Rru_A3062	0.78	-0.4
3,528,054	-		Rru_A3062	0.78	+0.0
3,528,054	-		Rru_A3062	0.78	+2.8
3,528,054	-		Rru_A3062	0.78	+0.0
3,528,054	-		Rru_A3062	0.78	+1.2
3,528,054	-		Rru_A3062	0.78	+0.0
3,528,072	-		Rru_A3062	0.79	+0.0
3,528,072	-		Rru_A3062	0.79	+1.4
3,528,149	+		Rru_A3062	0.83	+0.0
3,528,149	+		Rru_A3062	0.83	+0.9
3,528,150	-		Rru_A3062	0.83	+1.3
3,528,150	-		Rru_A3062	0.83	+0.4
3,528,150	-		Rru_A3062	0.83	+0.0
3,528,150	-		Rru_A3062	0.83	+0.0
3,528,417	-				+2.2
3,528,417	-				+0.9
3,528,439	-				+0.0
3,528,556	-				+0.0
3,528,702	+				+1.0
3,528,703	-				+0.0
3,528,730	+				+1.2
3,528,765	+				+1.5
3,528,813	+				+1.1
3,528,813	+				+0.0
3,528,813	+				+0.0
3,528,814	-				+0.5
3,528,814	-				+1.2
3,528,814	-				+1.8
3,528,939	+		Rru_A3063	0.18	-0.3
3,528,940	-		Rru_A3063	0.18	+1.3
3,529,002	+		Rru_A3063	0.23	+1.2
3,529,002	+		Rru_A3063	0.23	-1.6
3,529,002	+		Rru_A3063	0.23	+0.0
3,529,003	-		Rru_A3063	0.23	+0.0
3,529,003	-		Rru_A3063	0.23	+0.0
3,529,003	-		Rru_A3063	0.23	+1.2
3,529,003	-		Rru_A3063	0.23	+1.2
3,529,003	-		Rru_A3063	0.23	+0.0
3,529,173	+		Rru_A3063	0.36	+1.6
3,529,173	+		Rru_A3063	0.36	+0.0
3,529,173	+		Rru_A3063	0.36	+1.9
3,529,174	-		Rru_A3063	0.36	+2.1
3,529,174	-		Rru_A3063	0.36	+0.2
3,529,272	+		Rru_A3063	0.44	+0.0
3,529,272	+		Rru_A3063	0.44	+1.6
3,529,272	+		Rru_A3063	0.44	+1.0
3,529,273	-		Rru_A3063	0.44	+0.0
3,529,273	-		Rru_A3063	0.44	+0.5
3,529,273	-		Rru_A3063	0.44	+0.0
3,529,273	-		Rru_A3063	0.44	+0.9
3,529,551	+		Rru_A3063	0.66	+0.0
3,529,551	+		Rru_A3063	0.66	+0.5
3,529,551	+		Rru_A3063	0.66	+0.0
3,529,551	+		Rru_A3063	0.66	+0.0
3,529,552	-		Rru_A3063	0.66	+0.0
3,529,552	-		Rru_A3063	0.66	+0.0
3,529,552	-		Rru_A3063	0.66	+1.4
3,529,553	+		Rru_A3063	0.66	+0.0
3,529,553	+		Rru_A3063	0.66	+0.0
3,529,553	+		Rru_A3063	0.66	+0.0
3,529,553	+		Rru_A3063	0.66	+1.8
3,529,553	+		Rru_A3063	0.66	-1.0
3,529,553	+		Rru_A3063	0.66	+1.4
3,529,554	-		Rru_A3063	0.66	+1.4
3,529,910	+				+2.5
3,529,910	+				+0.0
3,529,910	+				+0.0
3,529,923	-				+0.0
3,530,161	+				+1.3
3,530,161	+				+0.0
3,530,161	+				+0.0
3,530,161	+				+0.0
3,530,161	+				+0.0
3,530,162	-				-0.1
3,530,162	-				+0.0
3,530,162	-				+1.8
3,530,162	-				+0.2
3,530,162	-				+0.1
3,530,162	-				+0.9
3,530,162	-				+1.4
3,530,164	-				+0.9
3,530,179	+				+0.0
3,530,179	+				+1.4
3,530,179	+				+0.0
3,530,180	-				+1.8
3,530,180	-				+0.0
3,530,181	+				+1.5
3,530,182	-				+0.2
3,530,182	-				+0.7
3,530,182	-				+1.0
3,530,182	-				+0.0
3,530,182	-				+1.0
3,530,314	+		Rru_A3064	0.13	+1.0
3,530,314	+		Rru_A3064	0.13	+0.8
3,530,314	+		Rru_A3064	0.13	+1.2
3,530,315	-		Rru_A3064	0.13	+0.0
3,530,315	-		Rru_A3064	0.13	+0.8
3,530,315	-		Rru_A3064	0.13	-0.3
3,530,315	-		Rru_A3064	0.13	+0.0
3,530,419	+		Rru_A3064	0.20	+1.5
3,530,419	+		Rru_A3064	0.20	+1.1
3,530,524	+		Rru_A3064	0.26	+1.7
3,530,526	+		Rru_A3064	0.26	+0.7
3,530,526	+		Rru_A3064	0.26	+0.0
3,530,526	+		Rru_A3064	0.26	+1.4
3,530,527	-		Rru_A3064	0.26	+0.9
3,530,527	-		Rru_A3064	0.26	+1.2
3,530,786	-		Rru_A3064	0.41	+0.0
3,530,848	+		Rru_A3064	0.45	+1.0
3,530,848	+		Rru_A3064	0.45	+0.0
3,530,848	+		Rru_A3064	0.45	+1.1
3,530,849	-		Rru_A3064	0.45	+2.0